PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027826001

Common Name

GSBRNA2T00027826001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 85aa MW: 8946.1 Da PI: 5.4278

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027826001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	21.3	2.8e-07	52	83	1	32
GRAS 1 lvelLlecAeavssgdlelaqalLarlselas 32 l++lLl+cA++++sg+l++a+a+L +ls+l+s GSBRNA2T00027826001 52 LIHLLLTCANHMASGSLQNANAALDQLSHLVS 83 689**************************998 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:1903506	Biological Process	regulation of nucleic acid-templated transcription

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MVATFQEDTA PSSVSSSPLQ VFSTMSLTRP TLLSSSSSSF QDLKPEERGL ILIHLLLTCA 60 NHMASGSLQN ANAALDQLSH LVSQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027826001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638736.1	2e-48	PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 3
Swissprot	Q9LPR8	8e-37	SCL3_ARATH; Scarecrow-like protein 3
TrEMBL	A0A078K092	1e-51	A0A078K092_BRANA; BnaCnng77190D protein
TrEMBL	A0A3P6FGC7	1e-51	A0A3P6FGC7_BRAOL; Uncharacterized protein
STRING	XP_006393154.1	9e-36	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-24	scarecrow-like 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Gong X, et al. SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. Plant Physiol., 2016. 170(3): p. 1675-83 [PMID:26818732] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Choi JW,Lim J Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation. Mol. Cells, 2016. 39(7): p. 524-9 [PMID:27306644]