PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00027946001

Common Name

GSBRNA2T00027946001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 146aa MW: 16610.7 Da PI: 10.2382

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00027946001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.7	5e-28	8	66	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W+ YGqK ++g++++r YY+Ct++gC vkk+ver a++ k ++itY g+H+h+ GSBRNA2T00027946001 8 LDDGYSWKNYGQKLIRGNPNARLYYKCTFSGCDVKKHVERRADNAKSLVITYYGNHEHD 66 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-27	2	68	IPR003657	WRKY domain
PROSITE profile	PS50811	29.034	3	68	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-24	4	68	IPR003657	WRKY domain
SMART	SM00774	5.1E-29	8	67	IPR003657	WRKY domain
Pfam	PF03106	2.5E-22	9	66	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MKSEENNLDD GYSWKNYGQK LIRGNPNARL YYKCTFSGCD VKKHVERRAD NAKSLVITYY 60 GNHEHDAPVQ RRKSYSLKKR SGSSMFQDAS NRTPRLGRPP FSSSAFQVFP PSLEPHLDMT 120 QINMNGLSKL PSLPANQVVH RYTWG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-23	3	69	12	78	Probable WRKY transcription factor 4
2lex_A	2e-23	3	69	12	78	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27015	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00027946001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593143	1e-119	KM593143.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY40) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009106856.1	1e-102	PREDICTED: probable WRKY transcription factor 10 isoform X1
Refseq	XP_009106857.1	1e-102	PREDICTED: probable WRKY transcription factor 10 isoform X2
Refseq	XP_009106858.1	1e-102	PREDICTED: probable WRKY transcription factor 10 isoform X3
TrEMBL	A0A078K0Z9	1e-105	A0A078K0Z9_BRANA; BnaCnng77260D protein
STRING	Bo3g185390.1	1e-100	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19518	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	8e-31	WRKY DNA-binding protein 10

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]