PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00028070001

Common Name

GSBRNA2T00028070001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21241.2 Da PI: 8.8631

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00028070001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.7	1.3e-12	2	51	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k++e++ r +tf kR++gi+KK +E+ C++e++ ++f ++g ++++ GSBRNA2T00028070001 2 KKVESYKARRTTFYKRKAGIFKKMNEIIAECGVEASFLVFPESGYPRTFA 51 5789****************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.965	1	54	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-15	1	68	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-6	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-13	3	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MKKVESYKAR RTTFYKRKAG IFKKMNEIIA ECGVEASFLV FPESGYPRTF AHPSMEDAVD 60 RVKCSLGHEP SGKDDASIGS LVEAHKKRKN EELAKKLCDL HEELKMAEEK EKKMVEKKKI 120 KELKNEWPNT LNEGVNKDEL KRVHQAFVEL SYSLSGKALQ RLGKNGDGSS SALAERGYCD 180 GGEAGAGEQT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00028070001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009112221.1	1e-138	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_013658039.1	1e-138	agamous-like MADS-box protein AGL61
Refseq	XP_013658040.1	1e-138	agamous-like MADS-box protein AGL61
TrEMBL	A0A397XRR2	1e-136	A0A397XRR2_BRACM; Uncharacterized protein
STRING	Bra037759.1-P	1e-137	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	4e-36	AGAMOUS-like 57

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]