PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00028251001

Common Name

GSBRNA2T00028251001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 544aa MW: 59098.8 Da PI: 6.9044

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00028251001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.1	6.4e-20	161	247	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++++ ++l+rg+l++ +We+v++ + r +++ +s +qCk+k++nl+kryk ++++++++ +s s++p+f+++e GSBRNA2T00028251001 161 EWSDAAITCLLDAYSDKFTQLNRGNLRGRDWEDVAATVseRCEKLIKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 247 5***********************************77788999**********************9.666779*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-21	159	249	No hit	No description
Gene3D	G3DSA:3.40.1160.10	5.0E-64	294	535	IPR001048	Aspartate/glutamate/uridylate kinase
SuperFamily	SSF53633	7.72E-52	302	535	IPR001048	Aspartate/glutamate/uridylate kinase
CDD	cd04254	2.28E-116	304	536	No hit	No description
Pfam	PF00696	2.1E-21	305	515	IPR001048	Aspartate/glutamate/uridylate kinase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016740	Molecular Function	transferase activity

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MASCDDDFSL LGGEDQSNPN QHHHHHHQVL HHAPYAPRRF APKLSNQIHA PHHHQSNGDE 60 DDEHHDVVAS SAFHGVNPFS TDENSNPYDN NNNAAVEGGD EDLDANRSRI GGGACLEKRQ 120 SQEELSDGGT TNGGDTTPYG SFKRPRTSSS SAGEYRKDRE EWSDAAITCL LDAYSDKFTQ 180 LNRGNLRGRD WEDVAATVSE RCEKLIKSVE QCKNKIDNLK KRYKLERHRM SSGGTSASHW 240 PWFKKMEEIV GNSMTTKGAS DEDRSGSSLG NAAKPARRYP LVTYNPGVQI NNVKSKATSN 300 PRWRRVVLKI SGAALACTGP NNIDPKIVGL IAREVAMACR LGVEVAIVVG SRNLFCGGTW 360 ITATGLDRTT AYHISMMASV MNSVLLQSSL EKMGVQARLQ TGIAVQGVGE PYNRQRATRH 420 LDKGRVVIFG GIGATLGNPL LSSDAAAALR AIDINAEAMV KGTNVEGVYD CHSQDSNATF 480 EHITFHELAS RGLTTMDTMA LNFCEENSIP VVVFNFLEAG NITKALCGEQ VGTLIDRTGR 540 GVS*

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MASCDDDFSL LGGEDQSNPN QHHHHHHQVL HHAPYAPRRF APKLSNQIHA PHHHQSNGDE  60
DDEHHDVVAS SAFHGVNPFS TDENSNPYDN NNNAAVEGGD EDLDANRSRI GGGACLEKRQ  120
SQEELSDGGT TNGGDTTPYG SFKRPRTSSS SAGEYRKDRE EWSDAAITCL LDAYSDKFTQ  180
LNRGNLRGRD WEDVAATVSE RCEKLIKSVE QCKNKIDNLK KRYKLERHRM SSGGTSASHW  240
PWFKKMEEIV GNSMTTKGAS DEDRSGSSLG NAAKPARRYP LVTYNPGVQI NNVKSKATSN  300
PRWRRVVLKI SGAALACTGP NNIDPKIVGL IAREVAMACR LGVEVAIVVG SRNLFCGGTW  360
ITATGLDRTT AYHISMMASV MNSVLLQSSL EKMGVQARLQ TGIAVQGVGE PYNRQRATRH  420
LDKGRVVIFG GIGATLGNPL LSSDAAAALR AIDINAEAMV KGTNVEGVYD CHSQDSNATF  480
EHITFHELAS RGLTTMDTMA LNFCEENSIP VVVFNFLEAG NITKALCGEQ VGTLIDRTGR  540
GVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ek5_A	1e-55	295	535	1	239	Uridylate kinase
3ek5_B	1e-55	295	535	1	239	Uridylate kinase
3ek5_C	1e-55	295	535	1	239	Uridylate kinase
3ek5_D	1e-55	295	535	1	239	Uridylate kinase
3ek5_E	1e-55	295	535	1	239	Uridylate kinase
3ek5_F	1e-55	295	535	1	239	Uridylate kinase
3ek6_A	1e-55	295	535	1	239	Uridylate kinase
3ek6_B	1e-55	295	535	1	239	Uridylate kinase
3ek6_C	1e-55	295	535	1	239	Uridylate kinase
3ek6_D	1e-55	295	535	1	239	Uridylate kinase
3ek6_E	1e-55	295	535	1	239	Uridylate kinase
3ek6_F	1e-55	295	535	1	239	Uridylate kinase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.27969	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00028251001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022543419.1	0.0	uncharacterized protein LOC106408006
TrEMBL	A0A078J6D8	0.0	A0A078J6D8_BRANA; BnaAnng16540D protein
STRING	Bra029812.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9305	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]