PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00028380001

Common Name

GSBRNA2T00028380001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 209aa MW: 22742.4 Da PI: 8.2857

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00028380001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.8	2.8e-32	42	169	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..... 88 +++++++ h kv+gR+RRvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a ++ + s++s+ + GSBRNA2T00028380001 42 QTKSSKDGHLKVEGRGRRVRLPPLCAARIFQLTRELGHKSDGETLQWLLRHAEPSIISATGTGIKPAADSVSRSQVSN-G----Fwanet 126 67899*********************************************************9999955522222222.1....112223 PP TCP 89 ..........................................k 89 + GSBRNA2T00028380001 127 gfgivganptgggldlncgigflgfdfngssdmgfennqmpqD 169 3555555555556666666666666665555555555555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.2E-25	45	196	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.632	46	100	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDPKNPPNLL NPEAEVKVLN NTVEGKSKWK QKEKGKQGRE IQTKSSKDGH LKVEGRGRRV 60 RLPPLCAARI FQLTRELGHK SDGETLQWLL RHAEPSIISA TGTGIKPAAD SVSRSQVSNG 120 FWANETGFGI VGANPTGGGL DLNCGIGFLG FDFNGSSDMG FENNQMPQDG VLNPLIYQQI 180 GQEQAKVLQH HHHHPHEAQQ ENADKQGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00028380001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634677.1	1e-140	PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP6
Swissprot	Q9FLM6	1e-59	TCP6_ARATH; Transcription factor TCP6
TrEMBL	A0A078J987	1e-152	A0A078J987_BRANA; BnaC01g43000D protein
STRING	Bo4g140760.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15743	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	1e-57	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]