PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00028681001
Common NameGSBRNA2T00028681001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 63aa    MW: 7622.94 Da    PI: 9.933
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00028681001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.29.3e-0833495126
                  NAM  95 kkgelvglkktLvfykgrapkgektdWvmhey 126
                          k++++ g k+++v+yk+ + k  kt Wvm ey
  GSBRNA2T00028681001   3 KTNKVEGYKESFVYYKKLKGKEDKTGWVMTEY 34 
                          467889***********99999********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.766151IPR003441NAC domain
SuperFamilySSF1019412.48E-7438IPR003441NAC domain
PfamPF023652.2E-4734IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MDKTNKVEGY KESFVYYKKL KGKEDKTGWV MTEYVPFMRV FMTIWCCVTY EERPRRKLNP  60
SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15256RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00028681001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078GHW04e-38A0A078GHW0_BRANA; BnaC03g22730D protein
TrEMBLA0A3P6AQH64e-38A0A3P6AQH6_BRAOL; Uncharacterized protein
STRINGBo3g035040.19e-39(Brassica oleracea)
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]