PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00029048001

Common Name

GSBRNA2T00029048001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 137aa MW: 16087.2 Da PI: 6.3515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00029048001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.5e-05	44	70	12	41
HHHHHHHHHHHHHCTSCCC...TTS-STCH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKa 41 RR++iN+++ L el+P + +++ ls a GSBRNA2T00029048001 44 RREKINTRIKLLHELVPGC---DKQWLSRA 70 9****************98...66656665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.9E-4	44	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MLTPKNAGGF TSLLEPPPTQ AVYLLHFTDL RNRFRYLHRR FTARREKINT RIKLLHELVP 60 GCDKQWLSRA ANVFAGDFKG DGADDAEEEN NDFFYDSETD HVHYVIKILF FLLYFQASIG 120 IFFMRFSEFR DFYDSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00029048001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189520	4e-34	AC189520.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091J13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078GIE2	2e-96	A0A078GIE2_BRANA; BnaC07g03660D protein
STRING	Bo7g011500.1	3e-72	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.2	4e-08	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]