PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00029173001
Common NameGSBRNA2T00029173001, LOC106435350
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 365aa    MW: 40306.1 Da    PI: 7.1033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00029173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12301346655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     ++  + a++L +Av+YIk+Lq
  GSBRNA2T00029173001 301 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 346
                          689*********************7....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.072295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16298361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-12299350No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15300357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-13301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MESEFQQHHF LLHDHQHQRP PRTSGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL  60
SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD DIPPTATAME VVEMAPPVST  120
GYASVVRSLG QNKRPRDDRT PANNLARHNS SPAGLFSSID VETAYAAVMK NMGGFGVMNM  180
SNSTEASSLT PRSKLPPPSM GSIPEVDDVK PVFSSRLPPR TLSGGFNQGS ASSKRMAIAR  240
TQSGGLDQYK TKDEDSSASR RPPLAHHMSL PKSLSDIEQL LSDSIPCKIR AKRGCATHPR  300
SIAERVRRTK ISERMRKLQD LVPNMDTQTN TADMLDLAVQ YIKDLQEQVK GLEESRARCR  360
CSCA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80030.0flower| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00029173001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0349411e-129AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBankAY0631201e-129AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587853.10.0PREDICTED: transcription factor bHLH122
RefseqXP_013731677.10.0transcription factor bHLH122
SwissprotQ9C6900.0BH122_ARATH; Transcription factor bHLH122
TrEMBLA0A078GKU60.0A0A078GKU6_BRANA; BnaC06g04380D protein
TrEMBLA0A0D3CPX90.0A0A0D3CPX9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GPY50.0A0A3P6GPY5_BRAOL; Uncharacterized protein
STRINGBo6g024810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.10.0bHLH family protein
Publications ? help Back to Top
  1. Yang Z, et al.
    Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.
    Mol. Cell Proteomics, 2013. 12(12): p. 3559-82
    [PMID:24043427]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K
    Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation.
    Plant J., 2016. 87(6): p. 559-67
    [PMID:27227462]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Takahashi Y,Ebisu Y,Shimazaki KI
    Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors.
    Plant Physiol., 2017. 174(2): p. 815-822
    [PMID:28438792]