PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00029687001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 667aa    MW: 75322.6 Da    PI: 5.8256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00029687001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023371392122
                          EEETTTTEEESSHHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                          ++C +C++ F++++++++Hi  
  GSBRNA2T00029687001 371 WVCCKCSEKFKDSESYMQHIVG 392
                          58*****************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.107.0E-851171IPR011990Tetratricopeptide-like helical domain
PfamPF047817.4E-2852160IPR006866Domain of unknown function DUF627, N-terminal
SuperFamilySSF484529.28E-852160IPR011990Tetratricopeptide-like helical domain
PfamPF047802.4E-113315664IPR006865Domain of unknown function DUF629
PROSITE patternPS000280373394IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MGQKKKPPAP RSKQSLSSSA AEAEPSSEVS ACTSYDGDEP SNLAEIKVEC EKALTSFRRG  60
SYNKAIRLMK ESCSRHQHSA LIHRVQGTVC VKVSSVYEDA VTKQKYIRSA IESARKAVEL  120
SPNSIEFAHF YANLLYEAAS DGREYEEVLQ ECHRALSIEN PIDPAKDSLQ DESQHKILTP  180
EARIANVQDE LRSLIQKSNL GSLSTWMKHL RNGEGEFRLF DMRKMAEDPI ESNLVQTRRP  240
NEIKKATKTL EERRKEIEVR VAAGRLLQQK SESSSVDSVN SKGSDPALGS GQRSVERRKH  300
GNARKNDSTV ERRDRVRSYW ESTGKEMKKE LLRIKVSDLK SHFSASKDGD ANDIITEALS  360
FCEANKTWRF WVCCKCSEKF KDSESYMQHI VGEHIGNVLP KMQMVLPQSL DSERIEMLLT  420
SPWKPLDFPA AVKLRCSQQK IQNTEFNEFY AEDYMDDGDD CFQDAWNDTS PEKEKIGDAC  480
NGYEKNESEK GRLPNPFYLP DEWPISDDPE RTKLLKSIRA AFELLIKHSY LATSHYDKVI  540
QFTLDELRNL PSVSQFLNRG LCQSPICIRF LGASQLKKIL QFLQDLSHAC GVSRYSEQSN  600
PNDEVNNFVD LGLQITEEIC LDGEGSCLLL DEKLLGSECI QDKHMGSALN NGDIASSEDI  660
ANGNNVS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.80000.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00029687001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013615265.10.0PREDICTED: uncharacterized protein LOC106321558
TrEMBLA0A0D2ZVR90.0A0A0D2ZVR9_BRAOL; Uncharacterized protein
STRINGBo01977s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM294036