PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00029966001
Common NameGSBRNA2T00029966001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 68aa    MW: 7421.71 Da    PI: 8.8783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00029966001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         k ienk+nrqvtfsk rng++K A+ELSvLCd+eva+i+fss gklye+ 
  GSBRNA2T00029966001  9 KLIENKINRQVTFSKGRNGLMKNAYELSVLCDVEVALIVFSSCGKLYEFG 58
                         579*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.73161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-27261IPR002100Transcription factor, MADS-box
CDDcd002658.32E-36259No hitNo description
PRINTSPR004048.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.9E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-293859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGRGRVEMKL IENKINRQVT FSKGRNGLMK NAYELSVLCD VEVALIVFSS CGKLYEFGSV  60
GYLCAPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-18161161MEF2 CHIMERA
6byy_B1e-18161161MEF2 CHIMERA
6byy_C1e-18161161MEF2 CHIMERA
6byy_D1e-18161161MEF2 CHIMERA
6bz1_A1e-18161161MEF2 CHIMERA
6bz1_B1e-18161161MEF2 CHIMERA
6bz1_C1e-18161161MEF2 CHIMERA
6bz1_D1e-18161161MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00029966001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0360634e-94AY036063.1 Brassica napus genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133732.11e-31PREDICTED: agamous-like MADS-box protein AGL6 isoform X1
RefseqXP_009133733.11e-31PREDICTED: agamous-like MADS-box protein AGL6 isoform X2
RefseqXP_013740649.22e-31agamous-like MADS-box protein AGL6 isoform X2
RefseqXP_018475381.18e-32PREDICTED: agamous-like MADS-box protein AGL6 isoform X3
RefseqXP_022571764.13e-31agamous-like MADS-box protein AGL6 isoform X1
SwissprotP293866e-31AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A078J7L64e-41A0A078J7L6_BRANA; BnaCnng36860D protein
STRINGBra000392.1-P6e-31(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-33AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]