PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00030047001

Common Name

GSBRNA2T00030047001, LOC106350379

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 145aa MW: 16440.1 Da PI: 10.7285

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00030047001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	47.3	5.6e-15	13	98	2	91
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 F +ly+i++d + +++isws +n nsf+v+d++++ +++L k +n++ F+ +L gF++v + ++ eF+h++F++g GSBRNA2T00030047001 13 FYVQLYQIVDDCSWDQIISWSkSNTNSFIVWDMKKLRSDILLKssSVLGKNVTEFIAKLRSHGFRSVAKGPGE-------LEFSHDEFSRGP 97 899****************8888************663367789***************9999.......*******986 PP X CS HSF_DNA-bind 91 k 91 GSBRNA2T00030047001 98 L 98 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.2E-16	6	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.5E-9	9	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.17E-12	11	97	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.8E-12	13	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-5	13	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.4E-5	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MSRKLSTGSS SSFYVQLYQI VDDCSWDQII SWSKSNTNSF IVWDMKKLRS DILLKSSSVL 60 GKNVTEFIAK LRSHGFRSVA KGPGELEFSH DEFSRGPLMK KKMMVKALSE SIERFDAQLK 120 ALKSRLKAKK ASLKVENLFQ NLRI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00030047001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633148.1	1e-100	PREDICTED: heat stress transcription factor A-4a-like
Refseq	XP_013645727.1	1e-100	heat stress transcription factor A-4a
TrEMBL	A0A078K174	4e-99	A0A078K174_BRANA; BnaUnng05160D protein
TrEMBL	A0A0D3BZY0	4e-99	A0A0D3BZY0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6C023	4e-99	A0A3P6C023_BRAOL; Uncharacterized protein
STRING	Bo4g139270.1	1e-100	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3839	14	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	2e-23	Winged helix-turn-helix transcription repressor DNA-binding

Link Out ? help Back to Top
Entrez Gene	106350379

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]