PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030112001
Common NameGSBRNA2T00030112001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 425aa    MW: 48024.1 Da    PI: 7.9915
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF611.4e-191053245
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         + en+  rq tf+kR+ngilKKA+ELS+LCd++  +++fs+ gk
  GSBRNA2T00030112001 10 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 53
                         6799*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.605153IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-28160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-24293IPR002100Transcription factor, MADS-box
CDDcd002661.59E-23284No hitNo description
PRINTSPR004043.8E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKASLCCGR  60
RSSIEEVISK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTEDLSTQ  120
ASVLQARISE IHGRLSYWTE VDKINNVDHL GQLEISIRQS LDQLRAHKEH LGQQQQQQAM  180
QIENANFVKD WSTCSLQDGI EIPLEQHLQS MSWVLNSDNT TNIITEEHNP IPKREVECSA  240
SSSFGSYPGY FGTGKSSETS FLDELNTTNG DIKPQLCTNN NNIIPYNPNI MQNDIKHHQT  300
YPPPPLPPPP LFNLPMNQRE YHMNGFFEAP PQPHGTSAYN NNNNQARFGS SSSSLPCSIS  360
MLDEYLFSQV KTKETLFSSS NIIKVKSNIC FIHYFNRCSN RTDDDRTSHG RSHPFFFVQK  420
QQAN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.284201e-142flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030112001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464590.0DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBankDQ6529540.0DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690591.10.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA40.0AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A078J9R30.0A0A078J9R3_BRANA; BnaA09g53680D protein
TrEMBLA0A3P5XZY60.0A0A3P5XZY6_BRACM; Uncharacterized protein
STRINGBra017404.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-163AGAMOUS-like 30
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]