PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030157001
Common NameGSBRNA2T00030157001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 578aa    MW: 65728.6 Da    PI: 6.4757
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030157001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.6e-5161651129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................................kvkaeeke 57 
                          +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp                                   + +++ e
  GSBRNA2T00030157001   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPDavdsetnsedrvkkllihpqllfykkvfsfwksLLPSKDLE 94 
                          79****************************.99**************95589************9999999998887766554444777* PP

                  NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          w+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s + ++vg+kktLv+y+grap+g++tdWvmheyrle
  GSBRNA2T00030157001  95 WFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HLRTVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 165
                          *************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-55454IPR003441NAC domain
PROSITE profilePS5100556.4346187IPR003441NAC domain
PfamPF023659.5E-297164IPR003441NAC domain
SuperFamilySSF1019411.57E-5586187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPDAVDSETN  60
SEDRVKKLLI HPQLLFYKKV FSFWKSLLPS KDLEWFFFSP RDRKYPNGSR TNRATKAGYW  120
KATGKDRKVT SHLRTVGTKK TLVYYRGRAP HGSRTDWVMH EYRLEEQECD SKSGIQDAYA  180
LCRVFKKSAL ANKLEEQHHG MKRKKATTNS EQSTSSTCLY SDGMYENLEN SGYPVSPDHG  240
LTQLGNISSS DMETIENKWS HFMSHDTSFN FPAQSQFCSQ YGTITYPPSK AEIAFECGRL  300
KNRMLPPAPP LHVEDLAHSE HLGTNVANDT DQMLSKIIAL AQASHEPHNS LGSWEFASAS  360
GNFQGDVCYP GEKASGSWVE ANMKAVDMQA HDGRFKEERI VENLRWVGVS NKELEKSFIE  420
EHSTVVPIED IWSYRKDSHE HQDGEGVNNN GDVDDVYTLE FSENELNANN SDKINNNDHD  480
ATSSPRFEMV NKVEVSHGLS VTTRQVTNTC FQQIVPSQTV IVYINPTGTV NCGHEKKLTE  540
EVHVVKQINP RIDSFVSKIL GPWRRFAYLL VSFISSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-51119312171NO APICAL MERISTEM PROTEIN
1ut4_B7e-51119312171NO APICAL MERISTEM PROTEIN
1ut7_A7e-51119312171NO APICAL MERISTEM PROTEIN
1ut7_B7e-51119312171NO APICAL MERISTEM PROTEIN
3swm_A8e-51119315174NAC domain-containing protein 19
3swm_B8e-51119315174NAC domain-containing protein 19
3swm_C8e-51119315174NAC domain-containing protein 19
3swm_D8e-51119315174NAC domain-containing protein 19
3swp_A8e-51119315174NAC domain-containing protein 19
3swp_B8e-51119315174NAC domain-containing protein 19
3swp_C8e-51119315174NAC domain-containing protein 19
3swp_D8e-51119315174NAC domain-containing protein 19
4dul_A7e-51119312171NAC domain-containing protein 19
4dul_B7e-51119312171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030157001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026844e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P194e-90AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618727.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBLA0A078J4500.0A0A078J450_BRANA; BnaCnng36980D protein
STRINGBo2g052630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]