PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030224001
Common NameGSBRNA2T00030224001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 831aa    MW: 93046 Da    PI: 5.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030224001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.4e-18108158255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrd + ng   r++lg+f taeeAa a+++a+ +++g
  GSBRNA2T00030224001 108 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFHTAEEAAMAYDKAAVRIRG 158
                          8********.**********44465..**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-28107167IPR001471AP2/ERF domain
CDDcd000181.32E-27108168No hitNo description
SuperFamilySSF541711.7E-19108168IPR016177DNA-binding domain
PROSITE profilePS5103222.642108167IPR001471AP2/ERF domain
PfamPF008474.2E-11108158IPR001471AP2/ERF domain
SMARTSM003804.7E-35108173IPR001471AP2/ERF domain
PRINTSPR003677.4E-10109120IPR001471AP2/ERF domain
PRINTSPR003677.4E-10132148IPR001471AP2/ERF domain
Gene3DG3DSA:1.10.275.101.2E-27394481IPR024083Fumarase/histidase, N-terminal
SuperFamilySSF485575.97E-93395814IPR008948L-Aspartase-like
CDDcd015980415813No hitNo description
TIGRFAMsTIGR009284.1E-106476817IPR004769Adenylosuccinate lyase
PfamPF002064.0E-51477682IPR022761Fumarate lyase, N-terminal
PRINTSPR001496.4E-14484502IPR000362Fumarate lyase family
Gene3DG3DSA:1.20.200.105.3E-87485756No hitNo description
PRINTSPR001496.4E-14530548IPR000362Fumarate lyase family
PRINTSPR001496.4E-14618645IPR000362Fumarate lyase family
PRINTSPR001496.4E-14661677IPR000362Fumarate lyase family
PROSITE patternPS001630661670IPR020557Fumarate lyase, conserved site
PfamPF083282.5E-51698812IPR013539Adenylosuccinate lyase PurB, C-terminal
Gene3DG3DSA:1.10.40.301.4E-32757812No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006188Biological ProcessIMP biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004018Molecular FunctionN6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MAFGNIQEPD GEILKNVWEN FIRKPETDTR SVHVQEVSTT WEALPTLDDI SKESKGSLPA  60
IDMSMEAKEW AEILDSIASF PSETNHEPLT NPTGSRSLSS PVSCKTRKYR GVRRRPWGKF  120
AAEIRDSTRN GVRVWLGTFH TAEEAAMAYD KAAVRIRGVE RAHTNFQIET VIKAMEMDCS  180
PNYYPINRSS TSQPLRNYRE TGGKETIRSY NDRVVDGMVD NSCAFSYCST QECLDICGMV  240
GDEETCTGSR KRQRRDEGCI MFQEVETDYK KMATRGEEKC DVFGLFEFEE FGSDSKLFTP  300
FVVVVVLLSL NPEISILQME LNFSSKALTN NKFPSCGFTP TTGKLLNPSK SLCLASHHPI  360
PTVSFSLSSS ADSLKLTTSR KVIAMAAGSS RDLEMSNLTA LSPLDGRYWG KVKDLASSMS  420
EFGLIYFRVL VEIKWLLKLS KIPQVTEVPS FSKEAEVYLQ GIIDGFSMDD ALEVKKIEKV  480
LEFFHFACTS EDINNLSHGL MLQEALTSVI LPSMDELIKS ISQMAKEFAY VPMLSRTHGQ  540
PASPTTLGKE MAIFAVRLSE ERRYLSETKI KGKFAGAVGN YNAHISAYPN IDWPHVAEEF  600
VTSLGLTFNP YVTQIEPHDY MARLFNTISQ FNNILIDFDR DIWSYISLGY FKQITKAGEI  660
GSSTMPHKVN PIDFENSEGN LGKANAELTF LSMKLPISRM QRDLTDSTVL RNMGGALGHS  720
LLAYKSAIQG IRKLQVNEAR LKEDLDQTWE VLAEPIQTVM RRYGVPEPYE KLKELTRGRA  780
VNEESIREFI KGLDLPEEAK TQLLKLTPHT YVGAAASLAL AVDEALHFGH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2pts_A0.03938241454Adenylosuccinate lyase
3gzh_A0.039482428480Adenylosuccinate lyase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.124270.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030224001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023310.0BT002331.1 Arabidopsis thaliana clone C105138 putative adenylosuccinate lyase (At1g36280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013671010.10.0uncharacterized protein LOC106375604
SwissprotP447970.0PUR8_HAEIN; Adenylosuccinate lyase
TrEMBLA0A078J4610.0A0A078J461_BRANA; BnaC01g40920D protein
STRINGBra013309.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM511824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-128ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]