PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030287001
Common NameGSBRNA2T00030287001, LOC106398457
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 208aa    MW: 22811.6 Da    PI: 9.0685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.4e-083861225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         kt++C++f+ t  C+ G++C+F H
  GSBRNA2T00030287001 38 KTKPCKDFFSTNGCPLGENCRFLH 61
                         9*********************** PP
2zf-CCCH38.51.9e-12173197126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          yk elC  fa+ G+C+yGdrC+FaHg
  GSBRNA2T00030287001 173 YKSELCEKFAA-GECNYGDRCHFAHG 197
                          9**********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00463663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.083664IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-93661IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-73663IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-63861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.106.8E-10100159IPR004088K Homology domain, type 1
PfamPF000132.4E-5101150IPR004088K Homology domain, type 1
SuperFamilySSF547915.77E-10101159IPR004088K Homology domain, type 1
CDDcd001051.62E-5103149No hitNo description
PROSITE profilePS5008410.588104153IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.8E-15170202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8172203IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8172198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469172199IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9173197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDTHKRGHSD TVSSSNSNVG SKRPKQKMES ISTGLRSKTK PCKDFFSTNG CPLGENCRFL  60
HYVPGGYKAV AKMLNLEPQI AESSKKTQTS SSASVAAKII VTAIIGKDGN RTKQLCRETG  120
VKLPIEDHER DPNLKNVEID GNYDQINEAN GRMRELIRRF GSDPANSAPR SSYKSELCEK  180
FAAGECNYGD RCHFAHGVAE LRWSGID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030287001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694461.11e-155zinc finger CCCH domain-containing protein 52
SwissprotQ9FG309e-77C3H52_ARATH; Zinc finger CCCH domain-containing protein 52
TrEMBLA0A078K3N21e-154A0A078K3N2_BRANA; BnaCnng78050D protein
STRINGBo2g007380.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2156134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-71C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]