PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031364001
Common NameGSBRNA2T00031364001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 488aa    MW: 54725 Da    PI: 6.1417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031364001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12340386455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  GSBRNA2T00031364001 340 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 386
                          799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-35115272IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.3E-17336402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.234336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-14339390No hitNo description
Gene3DG3DSA:4.10.280.108.5E-17340402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10340386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MIKLFFSLDQ ALNNQIKYFQ ENLKQEIKTL SILSPQKQIK DTNFKTPLPL QLTSVDPQQE  60
TRESMVGQKF WENQEDRAMV ESAIGTEACE FFISSNTSLP KLLPPPPPPP TDPNLQQGLR  120
HVVEGSDWDY AVFWLASNVN SSDGCFLIWG DGHYRATQKG NSSDKEDDET KRRVLSKLHF  180
DVDMFYLASL YFYFRCDSTK YGPAGTYVSG KPLWAADLPS CLSYYRVRSF LARSAGFKTV  240
LSVPVNCGVV ELGSLKLIPE DKSVVEMVKS VFGGSDFVQA PKIFGRQLSL GGSKPRSMSI  300
NFSPKMEDDS GFSLDAYEVG GSNQVEAALK PANGREEALN HVEAERQRRE KLNQRFYALR  360
AVVPNISKMD KASLLADAIT YITDMQKKIR VYETEKQVMK RKESNQITPG DVDYQQRHDD  420
AVVRVSCPLE THPVSNVVQM FRENEVTPHD TNVAVTEEGV VHTFTVRPQG GCTAEELKEK  480
LIASLSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-26334400268Transcription factor MYC2
5gnj_B6e-26334400268Transcription factor MYC2
5gnj_E6e-26334400268Transcription factor MYC2
5gnj_F6e-26334400268Transcription factor MYC2
5gnj_G6e-26334400268Transcription factor MYC2
5gnj_I6e-26334400268Transcription factor MYC2
5gnj_M6e-26334400268Transcription factor MYC2
5gnj_N6e-26334400268Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.36250.0bud| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031364001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896320.0AC189632.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS003O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598841.10.0PREDICTED: transcription factor bHLH3-like
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A078F5H00.0A0A078F5H0_BRANA; BnaC07g33660D protein
STRINGBo7g104400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]