PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031577001
Common NameGSBRNA2T00031577001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 200aa    MW: 22504.6 Da    PI: 9.8874
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031577001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.78.6e-3131261128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp G+rFhPtd+el+ +yL +k+ +++l+  ++i+ ++++ ++P ++p  +  eek+ yfFsk++++ +  +r + + ++gyWk  gk++
  GSBRNA2T00031577001   3 LPIGYRFHPTDQELILHYLLPKAFASPLPS-SIIPVFGVFFSHPLTFPGDL--EEKKRYFFSKKRREVS--SRIKISSDDGYWKPIGKER 87 
                          699*************************99.88***************655..77999******99876..58888889*********** PP

                  NAM  91 evlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                          e+++  g++vg+++tL+f++    ++k +kt+W m ey l
  GSBRNA2T00031577001  88 EIIA-CGRTVGIRRTLAFHETnkASSKLNKTRWNMTEYCL 126
                          ****.999***********6511445567*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-362144IPR003441NAC domain
PROSITE profilePS5100536.3053146IPR003441NAC domain
PfamPF023652.4E-194126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKLPIGYRFH PTDQELILHY LLPKAFASPL PSSIIPVFGV FFSHPLTFPG DLEEKKRYFF  60
SKKRREVSSR IKISSDDGYW KPIGKEREII ACGRTVGIRR TLAFHETNKA SSKLNKTRWN  120
MTEYCLAGFA STKVSGEWAV YNVHERKASK GKRQRKSRGR DDAEEENLSC IDFTIGSDHE  180
TGPPPPSPPT SADESGSII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-18112613140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154KGKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.177910.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031577001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667600.0KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013667872.11e-146NAC domain-containing protein 83-like isoform X2
TrEMBLA0A078F8Y81e-145A0A078F8Y8_BRANA; BnaC09g43200D protein
STRINGBo9g166250.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.18e-99NAC domain containing protein 84
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]