PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00031674001

Common Name

GSBRNA2T00031674001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRAS

Protein Properties

Length: 585aa MW: 66673.4 Da PI: 4.9175

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00031674001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35	1.9e-11	272	327	2	57
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 ++lL+ cA+ ++ gd+ + lL ++++++sp gd+ qRla++f++AL+arl++s+ GSBRNA2T00031674001 272 RTLLILCAQSITIGDMITSHDLLRQIRNQSSPLGDASQRLAHFFANALEARLQGSS 327 689*************************************************9965 PP
2	GRAS	160.1	1.9e-49	330	524	168	360
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256 +++++gvpfe+n++++k++e+++lee++++p+E+laVn vl+ ++l d + e+ +r+ +Lkl+++++P+v+v + + + n++ F +r GSBRNA2T00031674001 330 YCKRFGVPFEYNAIASKNWETIRLEEFKIRPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVFVNSTVNGSFNASFFTTR 419 6899********99***************************9999999889***************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345 f eal +y+a+fd++ ++l+r++ er+ E+++ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ + ++k + GSBRNA2T00031674001 420 FKEALFHYTAVFDMFGSTLSRDNPERMHFEEVFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVEAELVESFRVKMKKWGy 509 *********************************************************************************99999 PP GRAS 346 sdgyrveeesgslvl 360 + + ++e+s+++++ GSBRNA2T00031674001 510 HKDFVLDEDSNWFLQ 524 999******9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.7E-9	272	327	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-47	330	524	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	25.384	330	517	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MESNFSGMVN GYEYYYDVSY LPNQTPNLGF GVPSSNDFDL RLDRVQPSIW VPSTQQDQDQ 60 DQDQDSPPPG ADEMDSENTL LKYVNQLLME EETLAESQSM SYDSLALRQT EEMLQQVITD 120 SQTQSPYITP PYSINSSSSS SSGGPNMLRR FGQPANESMF GDANSVMQFK RGLEEASKFL 180 PNTDQWIFNQ ERERNEKGYM SRVRKHHHQL DEDDDEARRS KQSAANVDDG KLTEMFDKVL 240 LLDNQLDPQI NDNVSSKALA SNKGRDQSVD FRTLLILCAQ SITIGDMITS HDLLRQIRNQ 300 SSPLGDASQR LAHFFANALE ARLQGSSGGY CKRFGVPFEY NAIASKNWET IRLEEFKIRP 360 NEVLAVNAVL RFKNLRDVTP GEEDCPREGF LKLIRDMKPD VFVNSTVNGS FNASFFTTRF 420 KEALFHYTAV FDMFGSTLSR DNPERMHFEE VFYGREVMNV IACEGVDRVE RPETYKQWQV 480 RMMRAGFKQK PVEAELVESF RVKMKKWGYH KDFVLDEDSN WFLQGGVITN GRRWCAQQEY 540 HCNKGEVSQF YRSWGSNGSC LLVPATGKTT VARGTQKLET TLGL*

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MESNFSGMVN GYEYYYDVSY LPNQTPNLGF GVPSSNDFDL RLDRVQPSIW VPSTQQDQDQ  60
DQDQDSPPPG ADEMDSENTL LKYVNQLLME EETLAESQSM SYDSLALRQT EEMLQQVITD  120
SQTQSPYITP PYSINSSSSS SSGGPNMLRR FGQPANESMF GDANSVMQFK RGLEEASKFL  180
PNTDQWIFNQ ERERNEKGYM SRVRKHHHQL DEDDDEARRS KQSAANVDDG KLTEMFDKVL  240
LLDNQLDPQI NDNVSSKALA SNKGRDQSVD FRTLLILCAQ SITIGDMITS HDLLRQIRNQ  300
SSPLGDASQR LAHFFANALE ARLQGSSGGY CKRFGVPFEY NAIASKNWET IRLEEFKIRP  360
NEVLAVNAVL RFKNLRDVTP GEEDCPREGF LKLIRDMKPD VFVNSTVNGS FNASFFTTRF  420
KEALFHYTAV FDMFGSTLSR DNPERMHFEE VFYGREVMNV IACEGVDRVE RPETYKQWQV  480
RMMRAGFKQK PVEAELVESF RVKMKKWGYH KDFVLDEDSN WFLQGGVITN GRRWCAQQEY  540
HCNKGEVSQF YRSWGSNGSC LLVPATGKTT VARGTQKLET TLGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-14	330	492	170	328	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00031674001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602757.1	0.0	PREDICTED: scarecrow-like protein 31
Refseq	XP_013602758.1	0.0	PREDICTED: scarecrow-like protein 31
Refseq	XP_013602759.1	0.0	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	1e-125	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A078F945	0.0	A0A078F945_BRANA; BnaC08g45400D protein
STRING	Bo8g114020.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	1e-127	GRAS family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]