PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031675001
Common NameGSBRNA2T00031675001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 701aa    MW: 80213.1 Da    PI: 6.227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031675001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.59e-1063216972373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ +ssgd+ +a+ lL+++++++sp gd+ qRla +ft+AL+arl++ s+ ++ +   + ++++++ ++ l+ +k+f  +sP+
  GSBRNA2T00031675001 321 RTLLTLCAQSISSGDKLAADDLLNQIKKQCSPLGDASQRLAYFFTKALEARLQGsSGVKIQSYYDSITSKKRTAAQILKTYKAFLSASPF 410
                          6799*************************************************97888888888999999999***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +++ ++  N++Il+a + ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++e tg+rL+++++++gvpfe+
  GSBRNA2T00031675001 411 MTLIYFFSNKMILDASKDASVLHIIDFGILYGFQWPMFIQYISKSKIGPRKLRITGVELPQNGfrPTEKIEDTGRRLREYCKRFGVPFEY 500
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          ++l++k++e+++lee++++p+E+laVn+vl+ ++l d +   e+ +rd +Lkl+++++P+ +  +  + + n++ F++rf eal +ys+l
  GSBRNA2T00031675001 501 HALASKNWETIRLEEFKIRPNEVLAVNSVLRFKNLRDVTPGEEDcPRDGFLKLIRDMKPDAFLSSTINGSFNAPFFATRFKEALFHYSSL 590
                          ************************************9999999889******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                          fd++ ++l++e+ er+  E e++gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  +++ +  + + ++e+++
  GSBRNA2T00031675001 591 FDMFGSTLSKENPERMHFEGEFFGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVERELVESFREKMKRWGyHKDFVLDEDNN 680
                          ****************************************************************************999999******** PP

                 GRAS 357 slvlgWkdrpLvsvSaW 373
                          ++++gWk+r L+s S+W
  GSBRNA2T00031675001 681 WFLQGWKGRILFSSSCW 697
                          ***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.74294677IPR005202Transcription factor GRAS
PfamPF035143.1E-103321697IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MMESNFYRIV NGHKYYDVSF LPNQIPDLGF GVPSSSDFDL RLDHHHQQQP SYWIPSTQQD  60
QDQYSPPAAA DEIDSENTLL KYVNQLLMEE ETLSENQSLS SYDSLALRQT EEMLQQVIND  120
SLAQSSNSIT SSTSSGSSSG EYLNSNSNSC VRIETEANST ESEALSDDHP HHVFDSGVVS  180
FQGPNMSRGY GQPANEILVR SIFSDADSVN QFKRGLEEAS KFLPNTDQWI FNPQHEVIPV  240
KDEKGFSRVR KHHHQEPEEE EARRRKQSAV NVDDGNITEL FDKVLLLDNQ LDPQIKEETE  300
NVSSKKEGGR GKKKSKAVDF RTLLTLCAQS ISSGDKLAAD DLLNQIKKQC SPLGDASQRL  360
AYFFTKALEA RLQGSSGVKI QSYYDSITSK KRTAAQILKT YKAFLSASPF MTLIYFFSNK  420
MILDASKDAS VLHIIDFGIL YGFQWPMFIQ YISKSKIGPR KLRITGVELP QNGFRPTEKI  480
EDTGRRLREY CKRFGVPFEY HALASKNWET IRLEEFKIRP NEVLAVNSVL RFKNLRDVTP  540
GEEDCPRDGF LKLIRDMKPD AFLSSTINGS FNAPFFATRF KEALFHYSSL FDMFGSTLSK  600
ENPERMHFEG EFFGREVMNV IACEGVDRVE RPETYKQWQV RMMRAGFKQK PVERELVESF  660
REKMKRWGYH KDFVLDEDNN WFLQGWKGRI LFSSSCWVPS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4432769711374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031675001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013600943.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A078FA290.0A0A078FA29_BRANA; BnaC08g45390D protein
STRINGBo8g114030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]