PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031818001
Common NameGSBRNA2T00031818001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 379aa    MW: 43417.6 Da    PI: 6.2363
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031818001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.9e-06647337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                          ++C++++  ++  +C++    +C +C  + H++       H
  GSBRNA2T00031818001  6 SPMCDHCNMGKAVVYCKTHLARICSQCDRKLHHYvtmdspdH 47
                         579*****977********************96655555555 PP
2CCT54.73.6e-19314357144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a++RY eK+k+RkF KkirYesRK  A++++R+KGrF+k++
  GSBRNA2T00031818001 314 RLEAKKRYLEKKKKRKFGKKIRYESRKSSADTKKRLKGRFTKAD 357
                          7899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3452IPR000315B-box-type zinc finger
CDDcd000211.01E-4752No hitNo description
PROSITE profilePS5101713.652314356IPR010402CCT domain
PfamPF062031.0E-14314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MHIMSSPMCD HCNMGKAVVY CKTHLARICS QCDRKLHHYV TMDSPDHSRL LLCEKCVSQA  60
ADVQCLEQGL CLCQTCVPNA TVTSRFPFCN VSNNHSGYSF PRDLDLDSFS SSLSSSLTDL  120
SWGYPFVPLS PKNGDSSSSS SVIFQNFDNH TKNNSDQRVQ MLRPDYMDNS KDFSYSGLEG  180
YETKDIENVW LNNFDDNKAV LLDQKEYLYR EELILTDQLI DAIMKHNEET TTEVIHTDYN  240
IEALGNASCE DSNTNQMIQS KAKEETNNNV GILFPNAHIH DECRPSQLIL TDVDEMLPWD  300
DQLLESPIYT PQYRLEAKKR YLEKKKKRKF GKKIRYESRK SSADTKKRLK GRFTKADAEY  360
DYDPRANNTT KEAYKTKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031818001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603655.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLA0A078FDD10.0A0A078FDD1_BRANA; BnaC08g44180D protein
TrEMBLA0A0D3DYX00.0A0A0D3DYX0_BRAOL; Uncharacterized protein
STRINGBo8g115170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1355245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-14B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]