PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00031829001
Common NameGSBRNA2T00031829001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 748aa    MW: 82744.6 Da    PI: 6.0986
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00031829001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1967123157
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  GSBRNA2T00031829001  67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123
                          688999************************************************995 PP
2START208.32.9e-652824943206
                          HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
                START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                          a  a++el+++++++ep+W +++  ++++e+ ++f+++ +     +++ea+r+s+vv+m++   ve+l+d++ qW+  +a    +a+tl+
  GSBRNA2T00031829001 282 AVVAMEELMRMVQVDEPLWNSLV--LDEEEYARTFPRGIGpkpagFRSEASRESAVVIMNHISIVEILMDVN-QWSMLFAgmvsRAMTLA 368
                          56689******************..************999********************************.99999999999****** PP

                          EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
                START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                          v+s+g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+ +ds q++p     vR++++ Sg+li++++ng+skvtw
  GSBRNA2T00031829001 369 VLSTGvagnynGALQVMTAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDIYLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTW 454
                          *************************************************************8....************************ PP

                          EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vehv++++r +h l++++v++g+a+gak+wva l+rqce+
  GSBRNA2T00031829001 455 VEHVEVDDRGVHDLYKHMVSTGHAFGAKRWVAILDRQCER 494
                          **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2145122IPR009057Homeodomain-like
SuperFamilySSF466896.27E-1955123IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003891.2E-1765128IPR001356Homeobox domain
CDDcd000861.41E-1867124No hitNo description
PfamPF000463.4E-1767122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084841.07271497IPR002913START domain
SuperFamilySSF559617.61E-31272496No hitNo description
CDDcd088755.14E-121275493No hitNo description
SMARTSM002341.1E-57280494IPR002913START domain
PfamPF018521.4E-57283494IPR002913START domain
Gene3DG3DSA:3.30.530.208.9E-4370460IPR023393START-like domain
SuperFamilySSF559611.06E-26513739No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MFEPNMLLAA MNNEDSNNHS YNHEVNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD  60
PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ  120
MKNHLKRFGL MFLRYANMGK HNTCTQAYYN HHERHENSHL RAENEKLRGD NLRYREALAN  180
ASCPNCGGPT AIGEMSFDEH QLRLENSRLR EEIDRISAIA AKYVGKPVSN YPLMSPPPLP  240
PRPLELAMGN SGGDVYGNNP TDQFKSIIAP TESDKPVIID LAVVAMEELM RMVQVDEPLW  300
NSLVLDEEEY ARTFPRGIGP KPAGFRSEAS RESAVVIMNH ISIVEILMDV NQWSMLFAGM  360
VSRAMTLAVL STGVAGNYNG ALQVMTAEFQ VPTPLVPTRE TYFARYCKQQ ADGSWAVVDI  420
YLDSLQPNPP VRCRRRASGC LIQEMPNGYS KVTWVEHVEV DDRGVHDLYK HMVSTGHAFG  480
AKRWVAILDR QCERLASVMA TNISPGEVGV ITNQEGRRSM LKLAERMVIS FCAGVSASTA  540
HTWTTLSGTG AEDVRVMTRK SVDDPGRPPG IVLSAATSFW IPVPPKRVFD FLRDENSRNE  600
WDILSNGGVV QEMAHIANGR DTGNCVSLLR VNSANSSQSN MLILQESCTD PTASFVIYAP  660
VDIVAMNIVL NGGDPDYVAL LPSGFAILPD GNANGGGEGG SLLTVAFQIL VDSVPTAKLS  720
LGSVATVNNL IACTVERIKA SMSCETA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.99871e-126seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00031829001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001184911.10.0homeodomain GLABROUS 2
RefseqNP_001322673.10.0homeodomain GLABROUS 2
RefseqNP_001322674.10.0homeodomain GLABROUS 2
RefseqNP_001322675.10.0homeodomain GLABROUS 2
RefseqNP_001322676.10.0homeodomain GLABROUS 2
RefseqNP_001322677.10.0homeodomain GLABROUS 2
RefseqNP_001322678.10.0homeodomain GLABROUS 2
RefseqNP_001322680.10.0homeodomain GLABROUS 2
RefseqNP_172015.10.0homeodomain GLABROUS 2
RefseqNP_849596.10.0homeodomain GLABROUS 2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078F9M30.0A0A078F9M3_BRANA; BnaC08g44100D protein
STRINGAT1G05230.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]