PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00031954001

Common Name

GSBRNA2T00031954001, LOC106397462

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 149aa MW: 16353.7 Da PI: 7.5067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00031954001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	36	75	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ ++++ L++++ + +K + a++L A++YI L GSBRNA2T00031954001 36 KERKDKVGERISALQQIVSPY-----GKTDIASVLLDAMHYIEFL 75 88999************99.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.147	26	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.25E-4	27	80	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-8	27	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-10	27	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MDFSSNAGMM MENKRNVVCS LEESNIKRHK SDLSSKERKD KVGERISALQ QIVSPYGKTD 60 IASVLLDAMH YIEFLHEQVK VLSAPYLQTV STATLVEMEQ YSLSNRGLCL APMEFTAGVA 120 QSNGADIWAS VKTPPSPALN VKSQSPFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00031954001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353054	1e-129	AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693497.1	1e-108	transcription factor bHLH153 isoform X1
Swissprot	Q7XJU2	1e-86	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A078FDK7	1e-106	A0A078FDK7_BRANA; BnaC05g03860D protein
STRING	Bo5g006930.1	1e-106	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	5e-89	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106397462

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]