PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00031982001

Common Name

GSBRNA2T00031982001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

DBB

Protein Properties

Length: 565aa MW: 62649.5 Da PI: 4.9988

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00031982001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.1	6.5e-07	325	364	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +e+ +++ C ++ lC++C +e+H H+ GSBRNA2T00031982001 325 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 364 7*****************************6566666665 PP
2	zf-B_box	28.7	2.7e-09	376	407	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 ++C+ ++ek + +fC +++ llC+dC +++H GSBRNA2T00031982001 376 PRCDICQEKAAFIFCVEDRALLCRDCDESIHV 407 79*****************************4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07059	4.2E-64	36	250	IPR009769	Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
SMART	SM00336	2.8E-9	321	368	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.973	321	368	IPR000315	B-box-type zinc finger
CDD	cd00021	4.21E-7	324	366	No hit	No description
PROSITE profile	PS50119	9.684	373	420	IPR000315	B-box-type zinc finger
SMART	SM00336	1.4E-16	373	420	IPR000315	B-box-type zinc finger
CDD	cd00021	2.10E-10	376	419	No hit	No description
Pfam	PF00643	4.3E-7	376	416	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 565 aa Download sequence Send to blast
MASSGEVTEP EWIKRVKSEG AVPCLKPDSR DSKNSWTTPS PNTFMVRGPH YFSDKVKVPA 60 GEFLLKPLGF DWVKGPTKLS EILSYPSSRI RKAIDEEFQT EDDAAKPFVW AFNLQLPHKD 120 NYSAVAYFVA TEPMLQGSLM DQFLKGDDGF KKSRLKLIAN IVKGPWIVRK AVGEQAICVI 180 GRALSCKYVS GESFVEIDVD IGSSMVASAI VHLAFGYITT LTVDLAFLIE SQTDAELPEK 240 LLGAVRFSEL QTDSAVSMEL SSSNSNQRSS WWKSLGNGFS NLLNQDTPNT NYTSSPGNNQ 300 KDEDKVDSSV LDLLNQESRT VMKIQCDVCE NAPATVICCA DEAALCPKCD VEIHAANKLA 360 SKHQRLHLNS LSTKFPRCDI CQEKAAFIFC VEDRALLCRD CDESIHVANS RSANHQRFLA 420 TGIKVALSSS SCSKETDKNH QSEPSNNQQK AKEIPSQQQP SSASPLPWAV DDFFHFSDPE 480 FTDKKGQLDL GELEWFSDMG FFSDQINQET LPAAQVPELS VAHLGHVHSY RPMKSSVSYK 540 KPRLEIRVDD EDDEEEHFIV PDLG*

Sequence ? help Back to Top

Protein Sequence Length: 565 aa Download sequence Send to blast

MASSGEVTEP EWIKRVKSEG AVPCLKPDSR DSKNSWTTPS PNTFMVRGPH YFSDKVKVPA  60
GEFLLKPLGF DWVKGPTKLS EILSYPSSRI RKAIDEEFQT EDDAAKPFVW AFNLQLPHKD  120
NYSAVAYFVA TEPMLQGSLM DQFLKGDDGF KKSRLKLIAN IVKGPWIVRK AVGEQAICVI  180
GRALSCKYVS GESFVEIDVD IGSSMVASAI VHLAFGYITT LTVDLAFLIE SQTDAELPEK  240
LLGAVRFSEL QTDSAVSMEL SSSNSNQRSS WWKSLGNGFS NLLNQDTPNT NYTSSPGNNQ  300
KDEDKVDSSV LDLLNQESRT VMKIQCDVCE NAPATVICCA DEAALCPKCD VEIHAANKLA  360
SKHQRLHLNS LSTKFPRCDI CQEKAAFIFC VEDRALLCRD CDESIHVANS RSANHQRFLA  420
TGIKVALSSS SCSKETDKNH QSEPSNNQQK AKEIPSQQQP SSASPLPWAV DDFFHFSDPE  480
FTDKKGQLDL GELEWFSDMG FFSDQINQET LPAAQVPELS VAHLGHVHSY RPMKSSVSYK  540
KPRLEIRVDD EDDEEEHFIV PDLG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10174	0.0	leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00031982001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN386973	0.0	JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013697324.1	0.0	protein ENHANCED DISEASE RESISTANCE 2-like
Refseq	XP_013697325.1	0.0	protein ENHANCED DISEASE RESISTANCE 2-like
TrEMBL	A0A078FDM4	0.0	A0A078FDM4_BRANA; BnaC05g04110D protein
STRING	Bo5g007160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11621	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.1	1e-134	DBB family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]