PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032111001
Common NameGSBRNA2T00032111001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 448aa    MW: 49709.8 Da    PI: 4.4433
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032111001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS70.72.7e-223144222109
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                          ++lL+ cA+ +s+gd+  a+ lL +++++++p gd+ qRla +f++AL+arl + s+s++ +   + ++++++ +++l+++++f  +sP+
  GSBRNA2T00032111001 314 RTLLTLCAQSISAGDKITADDLLRQIRKQCTPLGDASQRLAYFFANALQARLEGsSGSTIQSYYDSIASKKRTAAQTLKSYHVFLSASPF 403
                          6799**************************************************6777777777999999999***************** PP

                 GRAS  91 lkfshltaNqaIleavege 109
                          +++ ++  N++Il+a++ +
  GSBRNA2T00032111001 404 MTLMYFYSNKMILDAAKDA 422
                          ***************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.499287447IPR005202Transcription factor GRAS
PfamPF035149.5E-20314422IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MESNFSGMVN GFEYYDVGFL PNQNPNLGFG VPSSSDFDLR LDHWVPATQQ DQGFDLHHQQ  60
QYSPPADEID SENTLLKYVN QLLMEGTLAE EQTTFYDSLA LRQTEQMLQQ VISDSQAQST  120
YTIPANSITS SSTTGGGSSY WSSTSNSSVG GQVLYDDDAV GDSGVISFQG PNTLRGFTQP  180
TSEILVRSMF TDTDSVNQFK RGLEEASKFL PNTDQWIFNP DHEVKEERGL SARKNRHRRE  240
EEEEDLEEAR SSKQSALTVV EDIKLTELFD KVLLLDGESD PQVIEEGDSV SSKPQVAKKE  300
GGRTKKKSQT FDFRTLLTLC AQSISAGDKI TADDLLRQIR KQCTPLGDAS QRLAYFFANA  360
LQARLEGSSG STIQSYYDSI ASKKRTAAQT LKSYHVFLSA SPFMTLMYFY SNKMILDAAK  420
DASQDRAEEA TDNGCRILFS SSCWVPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239RKNRHRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032111001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693996.10.0scarecrow-like protein 31
SwissprotQ3EDH01e-180SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A078FA640.0A0A078FA64_BRANA; BnaC05g05240D protein
STRINGBo5g008260.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.11e-177GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]