PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032112001
Common NameGSBRNA2T00032112001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 601aa    MW: 66906 Da    PI: 9.9853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07498547147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  GSBRNA2T00032112001 498 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 547
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735493552IPR017930Myb domain
SMARTSM007173.7E-6497550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9498548IPR009057Homeodomain-like
CDDcd116601.26E-15499549No hitNo description
SuperFamilySSF466893.05E-15499580IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVLQRRLDYG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL ESGGNSSSSS  60
NNAIGDGNEE DQCAVKTEPL YGGVQKVVEE RNCDHIHDNN AERRFFVSEI LPKTHGMESF  120
DRSPPPPKDF HFGSTSGVTS DSSEKLGTQE LGQSVCFRSE TNDKISMHGR LTNNCEPELT  180
RNVVAEDKHH IGTCFKKPIP PLVCSDDGEN FSARYTTKTF RSTLRIGDRK IKKVLASKYC  240
KVSSKQKDTT VTNSDLDLKP SYYNKKPCLK SLRSERRYPI KKRRYFDGYT ASQSEETPKK  300
GSGFMSTIAC QKQPALQSRD SHVKLGIKSF KVPELFIEIP ETATVGSLKR TVLEAVTTIL  360
EGGLRIGVLV HGKKVRDDSK MLLQSGISLD TLSDTLGFCL EPNPPQSTKP LSPEDSDCVR  420
PFNVPHSLTR CLASQGKHAK PSNSVESDLD SKPSAPNRAK PVYSRALIPV APPLHAQALN  480
VVPPRKPKRS EVAQRRIRRP FSVAEVEVLV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL  540
KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLMAHAYWSQ QQGKQQLLEG PHKLETSLGL  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-574855874106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032112001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013695732.10.0telomere repeat-binding protein 5-like isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A078FB570.0A0A078FB57_BRANA; BnaC05g05250D protein
STRINGBo5g008270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]