PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032284001
Common NameGSBRNA2T00032284001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 947aa    MW: 105192 Da    PI: 4.6639
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.67.8e-27110192271
              E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  GSBRNA2T00032284001 110 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 192
                          689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-45105198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-35109192IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-24112192IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.29E-20112193IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.34E-38197300IPR014889Transcription factor DP, C-terminal
SMARTSM011385.8E-63199349IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-41199316No hitNo description
PfamPF087819.5E-41200318IPR014889Transcription factor DP, C-terminal
SuperFamilySSF812969.8E-16860945IPR014756Immunoglobulin E-set
CDDcd028591.70E-20862945No hitNo description
PfamPF165615.3E-16863945IPR032640AMP-activated protein kinase, glycogen-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MTTTNGSNSN HNNRQHDDGS VTNNNNNPSN RSWGTVVSAQ SVSTSGGSMG SPSSRSEQTT  60
TVATTTSATD SAFIQLNNLD IQGDDAASQG PASGVKKKKR GQRATGPDKT GRGLRQFSMK  120
VCEKVESKGR TTYNEVADEL VAEFALPNND GTPPDQQQYD EKNIRRRVYD ALNVLMAMDI  180
ISKDKKEIQW RGLPRTSLSD IDELKAERLS LRNRIEKKTA YAQELEEQYV GLQNLIRRNE  240
HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM  300
KFCEQPPFNN AHSNNSQQTS HNILMLENNN QGPSTDPAPP QPADMYQSHP QLHSQPRVIP  360
TPVTNNDAAQ ATSQSVSVKP ENDRCWQLRS PTAMATLSLF SLASLQNRNP MFYHHRHQQQ  420
RQLLFVSHLK KKNSGFVCFA CSIKQTRVRK RVKSNEELRS EILEFVASAG LPPGHVPSMK  480
ELSAHERVDL ANVVRRRGYK FIRDLLANSE DCNELTSPSG VSLEDSLTEG QDEEALDSTE  540
PPSSTEMYST ATDASVSLDQ RTHNFTEEVD EECGGVIENE SSLSAVSRME DSTSNSSERE  600
ADNVLVAEDA PLTDDHCTSQ DLNYTKNVVE SVATESLSGE NAENFQNQQI DDMAENRSGR  660
ADDSVVEADD KDGMLSLSSS ASSIEEKTAR FIQNGYLDTV DDGMLEPVSD DEYNIPNESC  720
PEETKVSAET IKGGEYSHGG QRSVSMAPNG SAVAYEEVTY ATEANNSQRN SDHQYGNAEL  780
DKDSHAETMK RENQVEITRL RFMLRQKELE LSRLKEQIEK EKLSLSVLQR KAETEIQKAQ  840
MLVSQKDVEL QEAEESLSGL QEVEIEYCGD GNVVEVTGSF NGWEHRVGLG LETSKSTGKQ  900
KCWSTLLWLY PGTYEIKFIV DGQWITDPQR DSVTRGHITN NILKVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35103197193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in starch granule initiation in leaf chloroplasts. {ECO:0000269|PubMed:28684429}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032284001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937330.0AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415.
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022568408.10.0uncharacterized protein LOC106403588 isoform X1
SwissprotF4KFB30.0PTST3_ARATH; Protein PTST homolog 3, chloroplastic
TrEMBLA0A078FAE30.0A0A078FAE3_BRANA; BnaCnng02820D protein
STRINGBo9g181990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1044334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-174Transcription factor DP
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Seung D, et al.
    Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.
    Plant Cell, 2017. 29(7): p. 1657-1677
    [PMID:28684429]