PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00032337001

Common Name

GSBRNA2T00032337001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 535aa MW: 59049.8 Da PI: 6.1705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00032337001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.9	4e-12	47	91	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +g +t q++s+ qky GSBRNA2T00032337001 47 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 91 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.89E-16	41	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.684	42	96	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-6	45	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-18	45	94	IPR006447	Myb domain, plants
SMART	SM00717	7.6E-10	46	94	IPR001005	SANT/Myb domain
Pfam	PF00249	7.1E-10	47	91	IPR001005	SANT/Myb domain
CDD	cd00167	4.09E-7	49	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MTSSLSSNPV IAEERPTETS TDLTVNSLST EAPEKKVRKA YTITKSRESW TEGEHDKFLE 60 ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVEKNGT LAHVPPPRPK RKAAHPYPQK 120 ASKNAQMSLH VSMSFPTQIN NVPGYTSWDD DTSALLNIAV SEVILPKDEL TTLCGGEGKH 180 SHLHSFFFFA WPSSCSTCSS RTVSDSKTAN QAPSMHGLPD FAEVYNFIGS VFDPDSKGRM 240 KKLKEMDPIN FETVLLLMRN LTVNLSNPDF EPALLAGVVR DLWSRTKQVI YLLGELLAHN 300 NCLSAIKCCL RLLSEENITD QEGNMAVLVR TSSHQIGQSP ARLGLTGPGS PSVQNLTPSR 360 HGHPTSSSSS QSHHQQQQIQ QPPPNLPPSS SQMRASQLYA FADLDIGLPK TVENIEKKVE 420 ALMEPPPPPP DLSAIQGLLP PNIAVPSGWK PGMPVELPKD WRLPAPPPGW KPGDPVVLPP 480 ELVPAPRAQE QQQVRPPQGL HRPPDVIHVR EVQLDIMEDD SSEYSSEESS DDEE*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MTSSLSSNPV IAEERPTETS TDLTVNSLST EAPEKKVRKA YTITKSRESW TEGEHDKFLE  60
ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVEKNGT LAHVPPPRPK RKAAHPYPQK  120
ASKNAQMSLH VSMSFPTQIN NVPGYTSWDD DTSALLNIAV SEVILPKDEL TTLCGGEGKH  180
SHLHSFFFFA WPSSCSTCSS RTVSDSKTAN QAPSMHGLPD FAEVYNFIGS VFDPDSKGRM  240
KKLKEMDPIN FETVLLLMRN LTVNLSNPDF EPALLAGVVR DLWSRTKQVI YLLGELLAHN  300
NCLSAIKCCL RLLSEENITD QEGNMAVLVR TSSHQIGQSP ARLGLTGPGS PSVQNLTPSR  360
HGHPTSSSSS QSHHQQQQIQ QPPPNLPPSS SQMRASQLYA FADLDIGLPK TVENIEKKVE  420
ALMEPPPPPP DLSAIQGLLP PNIAVPSGWK PGMPVELPKD WRLPAPPPGW KPGDPVVLPP  480
ELVPAPRAQE QQQVRPPQGL HRPPDVIHVR EVQLDIMEDD SSEYSSEESS DDEE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6277	1e-72	leaf\| microspore\| microspore-derived embryo\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250, ECO:0000269\|PubMed:17363273}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00032337001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352624	1e-168	AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013610517.1	0.0	PREDICTED: protein REVEILLE 4 isoform X1
Refseq	XP_013747653.1	0.0	protein REVEILLE 4-like isoform X1
Swissprot	Q6R0G4	1e-149	RVE4_ARATH; Protein REVEILLE 4
TrEMBL	A0A078FBP1	0.0	A0A078FBP1_BRANA; BnaCnng03200D protein
STRING	Bo9g183320.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9487	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02840.3	1e-133	LHY/CCA1-like 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]