PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032377001
Common NameGSBRNA2T00032377001, LOC106433546
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 503aa    MW: 56046.3 Da    PI: 9.3594
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032377001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-1769115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT++Ede l +av ++ g++Wk+Ia+ ++  Rt  qc +rwqk+l
  GSBRNA2T00032377001  69 KGGWTPQEDETLRQAVDKYKGKRWKKIAEFFP-ERTQVQCLHRWQKVL 115
                          688*****************************.************986 PP
2Myb_DNA-binding605.1e-19121167148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd ++v++vk++G+  W++Ia+ ++ gR +kqc++rw+++l
  GSBRNA2T00032377001 121 KGTWTQEEDAIIVELVKKYGPAKWSLIAKSLP-GRIGKQCRERWHNHL 167
                          799*****************************.*************97 PP
3Myb_DNA-binding58.12e-18173216146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +++WTteE+  l++a +++G++ W+ Ia+ ++ gRt++ +k++w++
  GSBRNA2T00032377001 173 KDAWTTEEETALINAQQKHGNK-WAEIAKVLP-GRTDNAIKNHWNS 216
                          679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5364115IPR017930Myb domain
SuperFamilySSF466891.22E-1565122IPR009057Homeodomain-like
SMARTSM007178.1E-1568117IPR001005SANT/Myb domain
PfamPF002492.3E-1569115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2471131IPR009057Homeodomain-like
CDDcd001671.25E-1272115No hitNo description
PROSITE profilePS5129431.981116171IPR017930Myb domain
SuperFamilySSF466898.63E-32118214IPR009057Homeodomain-like
SMARTSM007175.4E-18120169IPR001005SANT/Myb domain
PfamPF002491.2E-17121167IPR001005SANT/Myb domain
CDDcd001672.56E-15123167No hitNo description
Gene3DG3DSA:1.10.10.609.5E-27132174IPR009057Homeodomain-like
PROSITE profilePS5129422.444172222IPR017930Myb domain
SMARTSM007176.4E-17172220IPR001005SANT/Myb domain
PfamPF002493.7E-16173216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23175222IPR009057Homeodomain-like
CDDcd001676.23E-13175218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MKSSGSNPLA FSPAKERSEM KIEILCMENK QPTPASASEG SVNIFLYSPQ LKTPAPAHRR  60
TSGPMRRAKG GWTPQEDETL RQAVDKYKGK RWKKIAEFFP ERTQVQCLHR WQKVLNPELI  120
KGTWTQEEDA IIVELVKKYG PAKWSLIAKS LPGRIGKQCR ERWHNHLNPG IRKDAWTTEE  180
ETALINAQQK HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYFATCN LPPSATKLSS  240
ATKPLKDSDS VTQSSSVNID ANEDGVDHVD SSSDMLEESG VNEYACSPVS VECKPQLPNL  300
RPMSPRINSN AFVQKKEENG FGTPRHGNLY YKSPLDSYFA SEADLRRMYG YECGCSPSAV  360
SSSPVSLTIT PPCNKDSGLA AATRSPESFL REAARTFPNT PSIFRKRRKV VLAKKTDDVV  420
NSVVKEADQN ENSKDSAVIS PVGREALLLL ETVDDSNEVL TFSVSPPYRV IAKRRAVFKS  480
RQLEFTSAKE NQPETSEEDK SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-66682225159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-66682225159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032377001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013729828.10.0transcription factor MYB3R-5 isoform X2
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A078FAK90.0A0A078FAK9_BRANA; BnaCnng03520D protein
TrEMBLA0A3P6EQI00.0A0A3P6EQI0_BRAOL; Uncharacterized protein
STRINGBo9g184660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]