PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032588001
Common NameGSBRNA2T00114104001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 70aa    MW: 8161.37 Da    PI: 9.5858
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032588001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.5e-11556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         r +W++eE+e l+ ++ ++G+g W+ I +         +Rt  ++k++w++ 
  GSBRNA2T00032588001  5 RRKWSAEEEEALLAGICKYGPGKWSYIINDPEfraqlSNRTNIDLKDKWRNM 56
                         789***************************9999***9************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.47161IPR017930Myb domain
SuperFamilySSF466891.15E-16458IPR009057Homeodomain-like
SMARTSM007172.0E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-15556IPR009057Homeodomain-like
PfamPF002491.0E-6556IPR001005SANT/Myb domain
CDDcd116601.52E-18657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MYAQRRKWSA EEEEALLAGI CKYGPGKWSY IINDPEFRAQ LSNRTNIDLK DKWRNMTIKE  60
EAKTLVNKI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190351e-116seed
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032588001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001077814.11e-22Homeodomain-like/winged-helix DNA-binding family protein
RefseqNP_177418.21e-22Homeodomain-like/winged-helix DNA-binding family protein
RefseqXP_006416694.11e-22telomere repeat-binding factor 4 isoform X3
RefseqXP_024008305.11e-22telomere repeat-binding factor 4 isoform X1
RefseqXP_024008306.11e-22telomere repeat-binding factor 4 isoform X2
SwissprotF4IEY49e-24TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A397Y6S39e-44A0A397Y6S3_BRACM; Uncharacterized protein
TrEMBLM4EQ239e-44M4EQ23_BRARP; Uncharacterized protein
STRINGBra030894.1-P1e-44(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16580812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-26MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]