PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032849001
Common NameGSBRNA2T00032849001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 991aa    MW: 110962 Da    PI: 5.3861
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032849001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.78.7e-57201363118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL+n++k+++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n
  GSBRNA2T00032849001  20 SEaRNRWLRPPEICEILQNYQKFQISTEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGQDN 109
                          4449************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ++fqrr+yw+L+eel++iv+vhylevk
  GSBRNA2T00032849001 110 ENFQRRSYWMLQEELSHIVFVHYLEVK 136
                          ************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.96915141IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-8418136IPR005559CG-1 DNA-binding domain
PfamPF038599.0E-5021135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.93E-16429511IPR014756Immunoglobulin E-set
CDDcd002043.84E-11590720No hitNo description
Gene3DG3DSA:1.25.40.201.7E-15591724IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.184594720IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.55E-15606723IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.11661693IPR002110Ankyrin repeat
SuperFamilySSF525401.65E-9768861IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92810832IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.029812840IPR000048IQ motif, EF-hand binding site
PfamPF006120.0039813831IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011833855IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468834858IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4836855IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MAEARRFGLN NELDVGQILS EARNRWLRPP EICEILQNYQ KFQISTEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSYNRMQRT EDSTRSSQET GEVYTSERNG YASGSINQYD  180
HSNNQSQATD SASVNGVHTP ELEDAQSAYN QQGSPILYSH QALHQPPSTS FDPYYQMSLT  240
PRDSYQKEIH TIPSSAMVEK SRTTNGPVVT NSIKNKKSID SQTWEEILGN CGSGGEGLPM  300
QPHSEHEGLD QMLQSYSFTM QDFASLQESI VKSQNQELNS GLTSDRSMWL QGQAVDIEPN  360
ALSNLASSEK APYLSTMKQH LLDGALGEEG LKKMDSFNRW MSKELGELGD SFTHSSSTAY  420
WEEEQLFSII DFAPNWTYVG CEVKVLVSGK FLKTAESGEW CCMFGQTEVP ADIIANGILE  480
CVAPMHEAGR VPFYVTCSNR LACSEVREFE YKVLESQGFD RDTDDSSTAC NSIESLEARF  540
VKLLCSKSDC TNSSLPGGND SDLSQVSEKI SLLLFENDDQ LDQMLMNEIS QENMKNNLLQ  600
EALKESLHSW LLQKIAEGGK GPNVLDEGGQ GVLHFAAALG YNWALEPTIV AGVSVDFRDV  660
NGWTALHWAA FFGRELIIGS LIALGASPGT LTDPNPDFPS GSTPSDLAYA NGYKGIAGYL  720
SEYALRTHVS LLSLNEKNAE TSLGGAVEAA PSPSSSALTD SLTAVRNASQ AAARIHQVFR  780
AQSFQKKQMK EFGDRKLGMS EERRGHSDDS VQAAAIRIQN KFRGYKGRKD YLITRQRIIK  840
IQAHVRGYQV RKNYRKIIWS VGILEKVILR WRRKGAGLRG FKSDALVTKM QDGTEKEEDD  900
DFFKQGRKQT EERLEKALAR VKSMVQYPEA RDQYRRLLNV VNDIQESKVE KALANSEEAT  960
CFDDDLIDIE ALLGDDDTLM MPMSSTLWNA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.68840.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032849001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140343.10.0PREDICTED: calmodulin-binding transcription activator 3-like
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A078GGM80.0A0A078GGM8_BRANA; BnaA04g12770D protein
STRINGBra030248.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  5. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  6. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  7. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  8. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  9. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]