PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033138001
Common NameGSBRNA2T00033138001, LOC106397080, NAC13-1.1
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 510aa    MW: 56808 Da    PI: 5.1304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033138001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45e-48161421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelvv+yLk+k+++kkl++  +i e+d+yk++P++Lp k  +++++++w+fFs+rd+k+ +g r++rat++gyWkatg 
  GSBRNA2T00033138001  16 LAPGFRFHPTDEELVVYYLKRKIRRKKLRV-AAIGETDVYKFDPEELPgKaLHNTGDRQWFFFSPRDRKQ-HGGRSSRATDRGYWKATGV 103
                          579***************************.88***************6434556889**********97.699**************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+ +++ +++ vg kktLvf++grapkge+tdWvmhey+l
  GSBRNA2T00033138001 104 DRIIKC-SSRPVGEKKTLVFHRGRAPKGERTDWVMHEYTL 142
                          *****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-5512165IPR003441NAC domain
PROSITE profilePS5100553.04916165IPR003441NAC domain
PfamPF023651.8E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
METSRRGSCR AGDRVLAPGF RFHPTDEELV VYYLKRKIRR KKLRVAAIGE TDVYKFDPEE  60
LPGKALHNTG DRQWFFFSPR DRKQHGGRSS RATDRGYWKA TGVDRIIKCS SRPVGEKKTL  120
VFHRGRAPKG ERTDWVMHEY TLHKEELEKC GDVKDNYVLY KIFKKSGSGP KNGEHYGAPF  180
VEEEWAEEDD EVDEADAVHV PTNQLMVSAC LGSNNNIWAD GGLNQSELNE NDIQELMRQV  240
SEETGVNSHV ANNNPVNLAE DEYLEIDDLL LPGPEPSYVD KEGSAVLNDN DFFDVDSYIG  300
DFDATNPQSE PVGVGLNNGV VQSLPVIDQA NSNQFQQQTW KNQDSNWPLR NSYTRKISSE  360
SWRDDEVTVC RYGEAPGTVD ASELINPITS GISITKGEEA TKDESSQFSS SVWSFLESIP  420
ASPAFASENP IVNLNIVRIS SLGGRYRFGS KSTSSNVVIA VNDSEAKRNK SGGNNKKNNH  480
KGFFCLSIIG ALCALSWVMM GVSGRSLLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-441617117171NO APICAL MERISTEM PROTEIN
1ut4_B3e-441617117171NO APICAL MERISTEM PROTEIN
1ut7_A3e-441617117171NO APICAL MERISTEM PROTEIN
1ut7_B3e-441617117171NO APICAL MERISTEM PROTEIN
3swm_A3e-441617120174NAC domain-containing protein 19
3swm_B3e-441617120174NAC domain-containing protein 19
3swm_C3e-441617120174NAC domain-containing protein 19
3swm_D3e-441617120174NAC domain-containing protein 19
3swp_A3e-441617120174NAC domain-containing protein 19
3swp_B3e-441617120174NAC domain-containing protein 19
3swp_C3e-441617120174NAC domain-containing protein 19
3swp_D3e-441617120174NAC domain-containing protein 19
4dul_A3e-441617117171NAC domain-containing protein 19
4dul_B3e-441617117171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13643KIRRKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.272320.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in oxidative stress tolerance by mediating regulation of mitochondrial retrograde signaling during mitochondrial dysfunction. Interacts directly with the mitochondrial dysfunction DNA consensus motif 5'-CTTGNNNNNCA[AC]G-3', a cis-regulatory elements of several mitochondrial retrograde regulation-induced genes, and triggers increased oxidative stress tolerance. {ECO:0000269|PubMed:24045019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033138001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat, salt stress, abscisic acid (ABA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747560.0KF974756.1 Brassica napus NAC transcription factor 13-1 (NAC13-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302970.10.0NAC domain-containing protein 13
RefseqXP_009103220.10.0PREDICTED: NAC domain-containing protein 13 isoform X1
SwissprotF4IED20.0NAC13_ARATH; NAC domain-containing protein 13
TrEMBLA0A078GKR40.0A0A078GKR4_BRANA; BnaA07g10300D protein
TrEMBLM4D7820.0M4D782_BRARP; Uncharacterized protein
STRINGBra012342.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153171517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32870.11e-171NAC domain protein 13
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  3. Wang B, et al.
    Identification and characterization of plant-specific NAC gene family in canola (Brassica napus L.) reveal novel members involved in cell death.
    Plant Mol. Biol., 2015. 87(4-5): p. 395-411
    [PMID:25616736]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]