PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00033493001

Common Name

GSBRNA2T00033493001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 492aa MW: 54144.8 Da PI: 9.8732

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00033493001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.6	2.8e-12	400	444	24	68
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 + ++k +W+ vs+++ erg+++sp+ ++k+++lnkr+kk++e++ GSBRNA2T00033493001 400 ALQRKIKWKFVSEVLFERGYHVSPQLSEDKFNDLNKRFKKLNENR 444 45999************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-7	400	443	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MEGMTCSVVD LVCRRRLVLG SVAGVGYVGG RDSSSLLKPL QMIRRYHSGG EGFDLENDGA 60 WSPEEVTIPA VLHCLPSSLL FCGYVWGGSS LGVVARAYEL HVAASGEFLR LHPRLIGELR 120 LPESSSGLWQ RVGLSLSRNK GVIFGSVVSA KEVQSGGCGL GVYTVPGLGG LEAAISKSPS 180 RTTAPPIIGL LLVQPVCPQC FKDWVAFLSG SSRQPKAQSA HTSYLGRRRC ANFGSCLGLF 240 FFALNRSLLS SPFFQSNLPQ LPPSSSSTSQ KVRPVPAPPS LPPAVKRDLS MIMSNLKLVA 300 FRDWDLWEPR DSAGSVLRQG FCVSGNPERL RSTADSFVQS LEGEKDANFP QEGVVCGGAL 360 SYKSFNLQGS MRVHHHNPNS RPLEGDDLSM DGGSRRKFAA LQRKIKWKFV SEVLFERGYH 420 VSPQLSEDKF NDLNKRFKKL NENRFNMHHD LALQHSVKLA FRNIDDQEND DFRNHQLERR 480 TNRKKKTTSN I*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MEGMTCSVVD LVCRRRLVLG SVAGVGYVGG RDSSSLLKPL QMIRRYHSGG EGFDLENDGA  60
WSPEEVTIPA VLHCLPSSLL FCGYVWGGSS LGVVARAYEL HVAASGEFLR LHPRLIGELR  120
LPESSSGLWQ RVGLSLSRNK GVIFGSVVSA KEVQSGGCGL GVYTVPGLGG LEAAISKSPS  180
RTTAPPIIGL LLVQPVCPQC FKDWVAFLSG SSRQPKAQSA HTSYLGRRRC ANFGSCLGLF  240
FFALNRSLLS SPFFQSNLPQ LPPSSSSTSQ KVRPVPAPPS LPPAVKRDLS MIMSNLKLVA  300
FRDWDLWEPR DSAGSVLRQG FCVSGNPERL RSTADSFVQS LEGEKDANFP QEGVVCGGAL  360
SYKSFNLQGS MRVHHHNPNS RPLEGDDLSM DGGSRRKFAA LQRKIKWKFV SEVLFERGYH  420
VSPQLSEDKF NDLNKRFKKL NENRFNMHHD LALQHSVKLA FRNIDDQEND DFRNHQLERR  480
TNRKKKTTSN I*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12396	4e-35	root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00033493001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A078GLD2	0.0	A0A078GLD2_BRANA; BnaC09g20150D protein
STRING	Bo9g069480.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-23	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]