PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033516001
Common NameGSBRNA2T00033516001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 219aa    MW: 24978 Da    PI: 10.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033516001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-0892138454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h  +Er RR++i + +  L++l+P +    s+   Ka  L + ++Y++sL
  GSBRNA2T00033516001  92 SHRFAERVRREKISEMLTLLQDLVPDS----SRITGKAVSLDEIINYVQSL 138
                          7999**********************9....899***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1386156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.12288138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1390159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-992143No hitNo description
PfamPF000101.7E-592138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-794144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MFFGQENQSR IPHPLTASRC RFSFHSPYET LRVKSSCLIH SIRPPPSPLC VFKAFFKLRG  60
GVVSGGIDDT KPPEPPKDYI HVRARRGQPA DSHRFAERVR REKISEMLTL LQDLVPDSSR  120
ITGKAVSLDE IINYVQSLKR QVELLYMKLA TINPRMESNR NAALSIKVKE NMLYAIACSE  180
QRLLLGYYSL AQNMPRFSDT QFLSKYGFVQ TKIWILGK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.288542e-41root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033516001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834931e-105AC183493.1 Brassica oleracea Contig B, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714240.11e-100transcription factor bHLH77-like
SwissprotQ9LK482e-67BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A078GKV11e-161A0A078GKV1_BRANA; BnaC09g20010D protein
STRINGBo1g019110.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.18e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]