PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033633001
Common NameGSBRNA2T00033633001, LOC106417657
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 252aa    MW: 27732.8 Da    PI: 4.7357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033633001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13185230655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  GSBRNA2T00033633001 185 SIAERMRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 230
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.742179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16182245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-12183234No hitNo description
Gene3DG3DSA:4.10.280.103.8E-16184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10185230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQSTHSGGGE GGGGGGDVSR GGLTRIRSAP ATWIETLLED DEEDDLKPNL CLTELLTGNS  60
AGLTSPDTFE FPSSVEQGLY NHQSGFYRQN SSPADFLSGS GATTDGVLSN FGIPANYDYL  120
PPNVNISPGS KRSREIEAQF SSQMKEEQMS SGVSGMMDMN MDTLLDDSVP FRVRAKRGCA  180
THPRSIAERM RRTRISDRIR RLQELVPNMD KQTNTADMLE EAVEYVKALQ RQIQELTEQQ  240
KRCRCTPKEE Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87960.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033633001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713890.10.0transcription factor bHLH80
SwissprotQ9C8P81e-130BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078JAN40.0A0A078JAN4_BRANA; BnaCnng37600D protein
STRINGBo6g043840.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-110bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]