PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00033886001

Common Name

GSBRNA2T00033886001, LOC106377324

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 302aa MW: 33073.3 Da PI: 9.3582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00033886001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.4	1.4e-16	72	158	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a e+ + ++g lk+++W ev++++ + +++++ +qCk++++ ++k+yk++k+ ++ + s++++f++le GSBRNA2T00033886001 72 CWSEEATRVLIDAWGERFAEPGKGTLKQQQWHEVAEVVngsGQCKYTKTDVQCKNRIDTVKKKYKQEKAKIASG--DGPSKWAFFKKLE 158 7***********************************88888889**********************98..56668****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-23	71	160	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEEDETQPS PAPSSPPVLP TSNVTVASAT KPPPSPPSPS RNALALVVHT PSVTVNKNGR 60 SGGGGGGGRD DCWSEEATRV LIDAWGERFA EPGKGTLKQQ QWHEVAEVVN GSGQCKYTKT 120 DVQCKNRIDT VKKKYKQEKA KIASGDGPSK WAFFKKLESL IGGGGKAQVV GARSSGPMRW 180 HFRKRSASET ESESDPEHSA ESLPPLQPLP KRLKMGESGV GEVAKAILGF TEAYEKAETG 240 KIKLMLELEK ERMKFVKEME LQRMQFLRTQ MEITQKNQEE ERSKPRINDD RNVKNNGDVS 300 S*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269\|PubMed:19155348}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00033886001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013672984.1	0.0	trihelix transcription factor ASIL1
Swissprot	Q9SYG2	1e-122	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	A0A078JAZ0	0.0	A0A078JAZ0_BRANA; BnaC03g78260D protein
STRING	Bo3g184450.1	1e-169	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8910	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	1e-101	6B-interacting protein 1-like 1

Link Out ? help Back to Top
Entrez Gene	106377324

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]