PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00033941001
Common NameGSBRNA2T00033941001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 323aa    MW: 35900.4 Da    PI: 6.7988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00033941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.3e-33176234159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCt+ gC vkk+vers++dp +v +tYeg+H+h+
  GSBRNA2T00033941001 176 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPYIVMTTYEGQHTHP 234
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-34161236IPR003657WRKY domain
SuperFamilySSF1182906.67E-30168236IPR003657WRKY domain
PROSITE profilePS5081132.73171236IPR003657WRKY domain
SMARTSM007743.2E-39176235IPR003657WRKY domain
PfamPF031061.2E-26177234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVNLDTSSDH HNHQLELANN INLSSIFDAP VSSPFPYSYL AEEPNHFLDL LSQDHHQFAS  60
SSNSSSFSFD AFPLQNNNTN LFYTDLPLSQ PSTTKATSSE VVNTATTSPN STSVSSSSKE  120
AVNDNTDKEV TLKDPEEGDQ QEQKDTKPQL KAKKKNQKKA REARFAFLTR SDIDNLDDGY  180
RWRKYGQKAV KNSPYPRSYY RCTTVGCGVK KRVERSSDDP YIVMTTYEGQ HTHPFPMTRG  240
HIAMLTSPIL NHGATTASSS SFSIPQPRYL LTQHHQPYSS MYNNSLSMIN QSSSDGIFAN  300
PGSSSFPVFS YDVSLASTST TSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-281692361077Probable WRKY transcription factor 4
2lex_A7e-281692361077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00033941001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300800.0KF430080.1 Brassica rapa WRKY transcription factor 75 (WRKY75) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018509766.10.0PREDICTED: probable WRKY transcription factor 48
RefseqXP_022548005.10.0probable WRKY transcription factor 48
SwissprotQ9FGZ41e-122WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A078JY560.0A0A078JY56_BRANA; BnaAnng41650D protein (Fragment)
TrEMBLA0A3P5XUJ10.0A0A3P5XUJ1_BRACM; Uncharacterized protein
STRINGBra036138.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.11e-114WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]