PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034033001
Common NameGSBRNA2T00034033001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 363aa    MW: 41178.4 Da    PI: 4.4408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034033001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-19130179255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +++GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  GSBRNA2T00034033001 130 KFRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 179
                          89*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30129187IPR001471AP2/ERF domain
PROSITE profilePS5103223.775130187IPR001471AP2/ERF domain
CDDcd000181.09E-33130186No hitNo description
SMARTSM003802.7E-39130193IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21130188IPR016177DNA-binding domain
PfamPF008474.9E-12130179IPR001471AP2/ERF domain
PRINTSPR003672.7E-10131142IPR001471AP2/ERF domain
PRINTSPR003672.7E-10153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMEEYIDFRP LKYTEHKTSV TKYTKKSPAK NPSGETRPDS VRIVRVSVTD PYATDSSSDD  60
EEDFLFPRRR VKRFVNEIKV EPACNNNNIN ITGVSMKERR RLSDETQYPT TSRHRRPLKV  120
SIPSAQNGRK FRGVRQRPWG KWAAEIRDPE QRRRIWLGTF ETAEEAAVVY DNAAIRLRGP  180
DALTNFSIPP QSQEEEEEPE QPVIDKPENN IATTTTTTTT TSSSESTEDF QHLSSPTSVL  240
NIRPSEDIQQ PFKSAKPEPE TSDAPWWHSG FSSGSGESDD SFPLDTSFLD SYFNECPPEI  300
SIFDQPMGQV FFENDDTFND MFLGGEIMMM NIGEEFTSSS IKDIGSMFSD FDDSLISDLL  360
LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22128194370ATERF1
3gcc_A3e-22128194370ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034033001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714018.10.0ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-153CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLA0A078J8990.0A0A078J899_BRANA; BnaCnng38100D protein
STRINGBo9g111050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-132cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]