PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034174001
Common NameGSBRNA2T00034174001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 179aa    MW: 19714.7 Da    PI: 5.6361
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034174001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000180102123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+k Fs+   L  H++ H
  GSBRNA2T00034174001  80 YTCQFCSKGFSTTQALGGHQNAH 102
                          9*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-776108No hitNo description
Gene3DG3DSA:3.30.160.602.8E-478105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.61480107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSSASSSSPQ PETSKDTIVA VEESNEKATE NNNNLSLVPS DQEVMSERRS ENPSLGLGSG  60
AVRTGTEMTM LYPSRSNKIY TCQFCSKGFS TTQALGGHQN AHKHDREWEK KRKEMEEDFP  120
GLSFLNRYID KPHLLLGGYS EDALSNDNHL GITLESFKRR GSGGVYPSFN SGVGPMDMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034174001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151175.11e-122PREDICTED: uncharacterized protein LOC103874503
RefseqXP_013704283.11e-122uncharacterized protein LOC106407995
TrEMBLA0A078K1J31e-131A0A078K1J3_BRANA; BnaAnng41800D protein (Fragment)
STRINGBra009937.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.17e-60C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]