PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00034274001

Common Name

GSBRNA2T00034274001, LOC106453234

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 375aa MW: 40887.8 Da PI: 8.9178

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00034274001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	77	138	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss GSBRNA2T00034274001 77 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 138 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	76	126	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-33	79	135	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	81	135	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	83	119	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSSARP NTVLTSSGGV SAAGAIVSTG 60 VSNSNNTSVV VERKSRPQEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS 120 LRNVPVGGSS RKNKRSSSSN ILQTTPSSLG LTTTLPDLNP PIIFSNQIPN KSKGASQDLN 180 MLSFPVMQDQ HVHMSKFLQM HKMEGNGNMT HQQPSSSSSL YGSSSSPVSA LELLRTGVNV 240 SSRSGINSFM PSGPMMDSSN NVMYTSSGFP TMVDYKTSNL SFSTDHQGLE HNNNNNNNNN 300 NNSSGDAHSD HHQGRVLFPF GDQMKELSSS ITQEVDHDDN QQQKSHGNNN NNNSSPNNGY 360 WSGMFSTTGG GSSW*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSSARP NTVLTSSGGV SAAGAIVSTG  60
VSNSNNTSVV VERKSRPQEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS  120
LRNVPVGGSS RKNKRSSSSN ILQTTPSSLG LTTTLPDLNP PIIFSNQIPN KSKGASQDLN  180
MLSFPVMQDQ HVHMSKFLQM HKMEGNGNMT HQQPSSSSSL YGSSSSPVSA LELLRTGVNV  240
SSRSGINSFM PSGPMMDSSN NVMYTSSGFP TMVDYKTSNL SFSTDHQGLE HNNNNNNNNN  300
NNSSGDAHSD HHQGRVLFPF GDQMKELSSS ITQEVDHDDN QQQKSHGNNN NNNSSPNNGY  360
WSGMFSTTGG GSSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14494	0.0	seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00034274001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013750952.1	0.0	dof zinc finger protein DOF2.5 isoform X1
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A078JC12	0.0	A0A078JC12_BRANA; BnaA04g27160D protein
STRING	Bra039272.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.2	1e-147	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106453234

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]