PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00034298001

Common Name

GSBRNA2T00034298001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 293aa MW: 31687.5 Da PI: 8.1159

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00034298001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120	8.9e-38	2	58	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ GSBRNA2T00034298001 2 VNCPRCNSINTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 58 79****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-23	1	50	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.323	2	56	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	2	56	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	4	40	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
AVNCPRCNSI NTKFCYYNNY SLTQPRFFCK GCRRYWTEGG SLRNIPVGGG SRKNKRSHSS 60 SVSSSSDINK NHSDSTQPAT KKHHSDHHHL MSMSQQGLTG QNPKFFETTQ QDLNLGFPPH 120 GLIRTNFTDL IHNIGNNNKS TNNPLLSSSS STTSAMAVSS LDLIRNNTSN NGSSSFMGFP 180 FHNQDPTSGG FSMQDHYKPC NSNTTLLGFS LDHHHNNGFH GGFQEGEGGG EAGDDVNGRH 240 LFPFEDLKLP VSSSSATINV DINDNQKRAS GGDASANSGG YWTGMLSGGS WC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.16456	1e-157	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269\|PubMed:20563990}.
Uniprot	TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269\|PubMed:20563990}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00034298001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK317153	0.0	AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
GenBank	AL109619	0.0	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161560	0.0	AL161560.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60.
GenBank	ATAC002343	0.0	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	AY037220	0.0	AY037220.1 Arabidopsis thaliana AT4g24060/T19F6_50 mRNA, complete cds.
GenBank	AY087686	0.0	AY087686.1 Arabidopsis thaliana clone 37663 mRNA, complete sequence.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137657.1	0.0	PREDICTED: dof zinc finger protein DOF4.6
Refseq	XP_013710275.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	1e-154	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A3P5ZFK1	0.0	A0A3P5ZFK1_BRACM; Uncharacterized protein
STRING	Bra013758.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-108	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]