PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00034303001

Common Name

GSBRNA2T00034303001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 226aa MW: 25435 Da PI: 9.4893

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00034303001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.4e-14	85	129	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k+ G+g+Wk I++ + k Rt q+ s+ qky GSBRNA2T00034303001 85 PWTEEEHKLFLLGLKKVGKGDWKGISKNFVKSRTSTQVASHAQKY 129 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-11	76	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.756	78	134	IPR017930	Myb domain
SuperFamily	SSF46689	3.36E-17	80	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-17	81	132	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-10	82	132	IPR001005	SANT/Myb domain
CDD	cd00167	7.17E-10	85	130	No hit	No description
Pfam	PF00249	3.2E-11	85	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MADGSSCSSD SGCISREIML FGVRVVLDPM RKSVSLNNLS EYEQTEEIPK IIIAEDEKNK 60 TSSGYASADD AVPISSSRER KRGVPWTEEE HKLFLLGLKK VGKGDWKGIS KNFVKSRTST 120 QVASHAQKYF LRRSNLNRRR RRSSLFDMTT DTVMPMEKDQ MLMHENMSQP SSLVPEIKIH 180 PVMQIFPEFP VPTSGDNASR NHLVPFTFQA RPEPISLSLT LASSNL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.12781	0.0	root\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00034303001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353076	1e-72	AK353076.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013589742.1	1e-168	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	2e-53	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A078JYA3	1e-167	A0A078JYA3_BRANA; BnaCnng78680D protein (Fragment)
TrEMBL	A0A0D3D0Q6	1e-166	A0A0D3D0Q6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GE64	1e-166	A0A3P6GE64_BRAOL; Uncharacterized protein
STRING	Bo6g119010.1	1e-167	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.1	2e-75	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]