PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00034346001

Common Name

GSBRNA2T00034346001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 341aa MW: 37642.9 Da PI: 7.5774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00034346001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00041	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H GSBRNA2T00034346001 157 YQCKSCDRTFSSFQALGGHRASH 179 9***********99999998887 PP
2	zf-C2H2	13.2	0.00026	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H GSBRNA2T00034346001 221 HECGICGAEFTSGQALGGHMRRH 243 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.83E-7	156	179	No hit	No description
Pfam	PF13912	2.7E-11	156	181	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.949	157	184	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.1	157	179	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	159	179	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.83E-7	216	243	No hit	No description
Pfam	PF13912	2.1E-11	220	245	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	221	245	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	221	243	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PVPFSSSPPI VSCHAHDIEE EYTDLDSKEN 60 ALGNNVENHN KDGVITSSSS SASWSSNNNP TLKAEEDEED LDIASCLILL SRGHSLPQLK 120 IPNHETTYNN KTYKFCSRRF LETSSSNGGG KAGYYVYQCK SCDRTFSSFQ ALGGHRASHK 180 KPKATSFYSN LDHLKKNIYE NDSLSTTTTI YNNNKNRSLV HECGICGAEF TSGQALGGHM 240 RRHRGAVVVA PTVTVALAAA NTELSLSSMS FDQISTKRAK KMVVSLDLDL NLPAPEDENR 300 VNGFSLGFKQ KHEQEHQQTK QRDEPKCLVL SPPTLVDCHY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00034346001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189388	0.0	AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013721481.2	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A078J8M0	0.0	A0A078J8M0_BRANA; BnaAnng17660D protein
STRING	Bra028791.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-143	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]