PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00034633001

Common Name

GSBRNA2T00034633001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 364aa MW: 40348.9 Da PI: 5.1247

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00034633001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	121.8	3.3e-38	154	242	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 +fqrlw+eeDei++LqG+idfk++tgksp+dd++ y+++kksisf+vsk+q+++Kir+L+kK+ +k+k sf+k+hdqk++ l GSBRNA2T00034633001 154 AFQRLWTEEDEIAVLQGMIDFKKDTGKSPYDDTNVYYDYIKKSISFEVSKNQFMDKIRSLRKKYIGKEKP-------SFTKPHDQKSYRL 236 69*************************************************************99876.......********* PP DUF573 92 skkiWg 97 ++ iWg GSBRNA2T00034633001 237 CQYIWG 242 ***9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-30	155	242	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MSKKRNPLED PPAASSSDEE EVESSAEEEE EEDDNSSSEE EEEDDPKPPP SSSAVTIAVP 60 GKPTATLPAD SESGSETETD SESEPEQPTN KGSGKAVLTA KKDKDTPPPP PVALALPAKS 120 GAKRPSTEGP SKETNSKRVK KDEEKREDSK KPAAFQRLWT EEDEIAVLQG MIDFKKDTGK 180 SPYDDTNVYY DYIKKSISFE VSKNQFMDKI RSLRKKYIGK EKPSFTKPHD QKSYRLCQYI 240 WGPDGMGLES AVKSNGASKK SQKKTKKLDS VKQELSFGAS PNGKTHDWFD NSFLVQGIAG 300 FGVDEHHVKQ RWSLVPVETK KKVEEKLKLL QAKEIEFVLQ KTEVLHEVTT MIAEASKNKP 360 LDI*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MSKKRNPLED PPAASSSDEE EVESSAEEEE EEDDNSSSEE EEEDDPKPPP SSSAVTIAVP  60
GKPTATLPAD SESGSETETD SESEPEQPTN KGSGKAVLTA KKDKDTPPPP PVALALPAKS  120
GAKRPSTEGP SKETNSKRVK KDEEKREDSK KPAAFQRLWT EEDEIAVLQG MIDFKKDTGK  180
SPYDDTNVYY DYIKKSISFE VSKNQFMDKI RSLRKKYIGK EKPSFTKPHD QKSYRLCQYI  240
WGPDGMGLES AVKSNGASKK SQKKTKKLDS VKQELSFGAS PNGKTHDWFD NSFLVQGIAG  300
FGVDEHHVKQ RWSLVPVETK KKVEEKLKLL QAKEIEFVLQ KTEVLHEVTT MIAEASKNKP  360
LDI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11961	0.0	flower\| root\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00034633001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013687236.1	0.0	probable transcription factor At1g61730
Swissprot	Q9SYA9	1e-128	STKLD_ARATH; Probable transcription factor At1g61730
TrEMBL	A0A078J675	0.0	A0A078J675_BRANA; BnaCnng38830D protein
STRING	Bo9g040950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-80	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]