PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034800001
Common NameGSBRNA2T00034800001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 358aa    MW: 39369.6 Da    PI: 9.321
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034800001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.18.5e-1775162187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          +W+++ +++Liea  e+ ++ ++g lk+++W+ev++++   r+ ++ ++ +qCk++++ ++k+yk++k+   ++  +  s++++f++lea
  GSBRNA2T00034800001  75 CWSEEATKVLIEAWGERFSEPGKGTLKQQQWKEVAEVVnesRQCKYLKTDVQCKNRIDTVKKKYKQEKAKVASG--DGPSKWVFFKKLEA 162
                          7*************************************988888999*************************98..56668******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2374163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSPSRNAL ALVVHTPSVV  60
GGSRNGRSGG GRDDCWSEEA TKVLIEAWGE RFSEPGKGTL KQQQWKEVAE VVNESRQCKY  120
LKTDVQCKNR IDTVKKKYKQ EKAKVASGDG PSKWVFFKKL EALIGAGGGK APMGRRQGNK  180
GTVLKRGSDS MKWHFRKRSA SETESESDPE PEASPPDSAE SLPPPPPSQL VSKRLKMDEL  240
GGSGVGDVAK AILGFTEAYE KAETAKLKLM LELEKERMKF VKEMELQRMQ FLKTQMEITQ  300
NHREEERSKP RINDDDDDRN VKNNGDNSDH HHAVAVVVVV VVMLSCLKQL ANKKTKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184197KRGSDSMKWHFRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.43620.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced by seed imbibition with a peak after 1 hour and then steadily decreases to be barely detectable at day 3. {ECO:0000269|PubMed:19155348}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034800001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529212e-90AK352921.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-08-P22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588058.10.0PREDICTED: trihelix transcription factor ASIL1-like
SwissprotQ9SYG21e-137ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A078GNF10.0A0A078GNF1_BRANA; BnaC06g10480D protein
TrEMBLA0A0D3CSA30.0A0A0D3CSA3_BRAOL; Uncharacterized protein
STRINGBo6g050870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.13e-856B-interacting protein 1-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]