PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034826001
Common NameGSBRNA2T00034826001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 315aa    MW: 34646.3 Da    PI: 8.9738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034826001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.8e-165094147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +W++ E+e+++da++++G   W+ I +++g ++t+ q++s+ qk+
  GSBRNA2T00034826001 50 REKWSEAEHERFLDAIELYGRA-WRQIQEHIG-TKTAVQIRSHAQKF 94
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-154499IPR009057Homeodomain-like
PROSITE profilePS5129420.2044599IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-94697IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-164897IPR006447Myb domain, plants
SMARTSM007172.3E-124997IPR001005SANT/Myb domain
PfamPF002493.4E-135093IPR001005SANT/Myb domain
CDDcd001671.32E-95295No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAAPDRSEDG SSNVENGSCN SNEGTNHETS SCRIANAAKV RKPYTVSKQR EKWSEAEHER  60
FLDAIELYGR AWRQIQEHIG TKTAVQIRSH AQKFFSKVAR EADSGRDGSV KTVVIPPPRP  120
KRKPTHPYPR KSPVPYAQSP SSNLEKGTKS PTSVLSPFDS EDQNDYATSK QSFKEDDAVT  180
GSKPISSIML FGKIVLVTGE SHKTSSSRED SGVDHKSTTG QDSRHVDTAL SLGVWDTSCT  240
GSNVFGSVTE ISDNLEKSAE ARKRLTSLEK QEPCYRANGF RPYKRCLSER EVTSSLSLVA  300
SEEEGSRRRA RVCS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.192590.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00341DAPTransfer from AT3G10113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034826001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288892.10.0protein REVEILLE 7
SwissprotF4J2J61e-145RVE7L_ARATH; Protein REVEILLE 7-like
TrEMBLA0A078GLQ10.0A0A078GLQ1_BRANA; BnaA06g12480D protein
STRINGBra025914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10113.11e-136MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]