PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034913001
Common NameGSBRNA2T00034913001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 647aa    MW: 71945.7 Da    PI: 5.7306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034913001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.1e-09539587348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +W+  E + lv++v ++G g W+ I +       +Rt+ ++k++w+++l
  GSBRNA2T00034913001 539 AWSLSEVKNLVEGVSKYGVGKWSVIKKLSYssfPHRTPVDLKDKWRNLL 587
                          7**************************9999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.595532591IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-14533590IPR009057Homeodomain-like
SuperFamilySSF466892.77E-16534590IPR009057Homeodomain-like
SMARTSM007171.9E-8536589IPR001005SANT/Myb domain
CDDcd116603.29E-21538588No hitNo description
PfamPF002495.9E-7539587IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MGTMVGSVED YGEMFQDAVD QTSGASLSSS NQIENPVVYK LVRVAQDGRL VPATDEEMLE  60
VKDLVENNEN DISVVPDPGQ YEYITDEGSP SQFLQLDSLE GSVTITPKHI IRLLNPGFFQ  120
LETAEAYTEN LNSRLESKEE LVYGSQMPFT LLDTNYHSSN ELPGDEEFVL SEVLLQEPVC  180
FSSDGCGIDQ PMDVSPYSNA AGGSPKAPAL STTASTPGAS RDTEEICLGN LSIKALQDTF  240
RATFGRETTC KDKLWLERKI KMGRINPCVI PTTSLTVDDT KLILGGQDSD MVVAFSKDTF  300
DEGRASPDCI KRHPNDFGYS PVEAFVDHYS GNEDFEGEYR SAKRVRKATR RYIEEISKVD  360
DEKQQSKESP IPSKDERSIN TVSSGRRVVV TRMVSLGGSI IQVPYVSHVR RSRPRENIMA  420
LGEFNSGLWE VKGNPEESDL NLSQSQLNND VKRVSGVKSV SGPVQKKLVA HCVLDPQMQI  480
TTNDQSYKDH SKPKLREVDE DIMEPEYMDS SGDSSDDSTY NRVDRPITQS AMRRKHHRAW  540
SLSEVKNLVE GVSKYGVGKW SVIKKLSYSS FPHRTPVDLK DKWRNLLKAC FARAPSNKMG  600
SMRKYGSMAI PSQVLSQVKE LSQKKSHVSP ARKARMVKAS SRHGFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.279510.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034913001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149196.10.0PREDICTED: uncharacterized protein LOC103872532
RefseqXP_018508046.10.0PREDICTED: uncharacterized protein LOC103872532
TrEMBLA0A078GNN30.0A0A078GNN3_BRANA; BnaA06g11740D protein
STRINGBra025973.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]