PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00035003001

Common Name

GSBRNA2T00035003001, LOC106363241

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 186aa MW: 20655.4 Da PI: 8.445

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00035003001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.9	7.2e-15	20	63	6	49
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + r +tfskR+ngi K +ELS+LC+a+v +i+s +gk +++ GSBRNA2T00035003001 20 NEDRIITFSKRKNGIYTKLSELSILCGADVGFLIYSGSGKPFTF 63 567899**********************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.85E-23	7	81	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.175	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.3E-20	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-18	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MGGKKTRGRQ KIDIKKVTKN EDRIITFSKR KNGIYTKLSE LSILCGADVG FLIYSGSGKP 60 FTFGSPSFDD VAQRFLHGNH HSGIINGEGN SSASLIVDAH KKVKMDEFCK NLNNLMEIKT 120 DAEEEKLKMA EPAYAPSLPV KSTDEEEKQL LRRYEEYYEE LCEVAAAKIR GRYDAAASSS 180 FPQHG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00035003001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013658470.1	1e-136	agamous-like MADS-box protein AGL29
TrEMBL	A0A078GM39	1e-135	A0A078GM39_BRANA; BnaA09g26550D protein
STRING	Bra032347.1-P	1e-116	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4676	13	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29962.1	7e-44	AGAMOUS-like 64

Link Out ? help Back to Top
Entrez Gene	106363241

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]