PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035086001
Common NameGSBRNA2T00035086001, LOC106422387
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 413aa    MW: 45725.4 Da    PI: 4.984
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035086001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.42.9e-35221317297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkife 90 
                          +fqr+w+eeDeiv+LqG+id++ +tg++p+dd +a+ye +kks+sf+ +k q++eKir LKkKf  +  k +k+g+e +fsk+hd ++f 
  GSBRNA2T00035086001 221 YFQRVWTEEDEIVILQGIIDYQFETGSNPFDDKNALYELLKKSVSFNPTKIQFLEKIRGLKKKFDSNLGKeKKKGEELVFSKSHDLEAFR 310
                          8******************************************************************9997899**************** PP

               DUF573  91 lskkiWg 97 
                          lsk +W+
  GSBRNA2T00035086001 311 LSKFVWK 317
                          ******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.8E-29222317IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKPNKTHSQV TPLKNRKKKT KEKVMTVEHL QDQQSASASD EDSVENSLSS EEEEETDSKK  60
GETSKTRANS SSPVTKPPPA DSNKVETSKK RSSETDEGEE AKRVKRVSLS GDGDNKKSTS  120
SSEEETDSES ETESVADSKI VETSSKPKTT ANSLSEVATV SSSYEDSSSS SGDEETDPPV  180
PNPVVEPPAD SSRKVVEASS KKQPSIETDE GEAKRDTKKN YFQRVWTEED EIVILQGIID  240
YQFETGSNPF DDKNALYELL KKSVSFNPTK IQFLEKIRGL KKKFDSNLGK EKKKGEELVF  300
SKSHDLEAFR LSKFVWKDHD GITANAIGVE PAVLKLVEPK QGSVSLVESV TRFGMDGLVA  360
KKGWSRLSSE DKKSLEEEWE ALALEEFKFY SRKSRIIHDA IAKMAEASQP DH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.286490.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035086001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718664.10.0probable transcription factor At1g44810
TrEMBLA0A078GLX30.0A0A078GLX3_BRANA; BnaA03g60220D protein
TrEMBLA0A3P5ZWD60.0A0A3P5ZWD6_BRACM; Uncharacterized protein
STRINGBra038583.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3065622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-29DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]