PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035335001
Common NameGSBRNA2T00035335001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 233aa    MW: 26142.3 Da    PI: 5.6838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035335001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind25.24.4e-08943236
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHH CS
         HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvvldeeef 36
                         F   +ye+++d++l+++isws++++sfv++d++e+
  GSBRNA2T00035335001  9 FYAGVYEVVDDPSLDSIISWSKSNKSFVIWDSKEL 43
                         77889***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004150.0014580IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.9E-8644IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.41E-7645IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-5944IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSWMGMSQFY AGVYEVVDDP SLDSIISWSK SNKSFVIWDS KELVFRDASA TSCHSLSAIF  60
VESEFAERRF VELISAPTAD RSQGQAGLMS LPADQFLYTP NLGWVYGING PKPVVRWALW  120
RNVKFISNRR GVRVTGRSID NGCEHRIDHA SVDRSTRVEN TRVLPTVMCA VAEEESLCYT  180
GRSIDDGCER RIDHDSIDRS AGYDIDSIDR SVGWVIQHAI DRSLERKVGP KE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.190892e-35flower| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035335001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078GMT21e-170A0A078GMT2_BRANA; BnaC01g23850D protein
TrEMBLA0A0D3A9R61e-170A0A0D3A9R6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDX41e-170A0A3P6FDX4_BRAOL; Uncharacterized protein
STRINGBo1g084910.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.17e-10Winged helix-turn-helix transcription repressor DNA-binding
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]