PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00035469001
Common NameGSBRNA2T00035469001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 199aa    MW: 21958.2 Da    PI: 4.5188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00035469001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.3e-099402655
                  AP2 26 g.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                         + k+ k+++lg+f taeeAa a++ a++++ g
  GSBRNA2T00035469001  9 KsKQeKKHWLGTFNTAEEAALAYDVAARSISG 40
                         25457**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.548148IPR001471AP2/ERF domain
SMARTSM003801.5E-7554IPR001471AP2/ERF domain
PfamPF008472.1E-5839IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-101048IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-141147IPR001471AP2/ERF domain
CDDcd000182.75E-131747No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLKSRNMGKS KQEKKHWLGT FNTAEEAALA YDVAARSISG SLAKTNFFYT DNISLQPQPQ  60
QFLQSSSDKA FFANPVASLE PNMSLGSSSF CFQQENNHFL SSNLTNSFSH CYDDDDHVGK  120
SKEISLPSLP NDMSSSLFSR QDKTEEDGNA DKMKLGSVLT DEAHCFEYDF LLSGMPLSLL  180
SDYNEDLPQI NGSSSSFI*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00035469001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696443.11e-127ethylene-responsive transcription factor ERF088-like
SwissprotQ3E7034e-64ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A078GPP51e-143A0A078GPP5_BRANA; BnaA09g46790D protein
STRINGBra026949.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-52ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]